| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 174 (0.450) | 22 (0.080) | 11/82 | NT | 15.9% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 106 (0.380) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 139 total aligned reads displayed.
CCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161500‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTT > CP009273/1162077‑1162141 CCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTG > 1:20824402/1‑68 TTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATT > 1:1414089/1‑68 ATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTC > 1:17515600/1‑68 ATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTC > 1:15014217/1‑68 ATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTC > 1:12750940/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:13867541/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:17581563/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:25721293/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:26645784/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:27791224/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:29173728/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:13198324/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:12281327/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:31310990/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:7257518/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:31320723/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:6179993/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:6162962/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTAAGCCATTGAAAAAGATTGTGATTGTCc > 1:5501883/1‑67 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACTCCATTGAAAAAGATTGTGATTGTCGGCG > 1:5503169/1‑68 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCG > 1:30493376/1‑68 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCG > 1:10003371/1‑68 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCG > 1:26701241/1‑68 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCG > 1:30163966/1‑68 AATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGC > 1:3760555/1‑68 AATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGC > 1:16292748/1‑68 AATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGC > 1:13368122/1‑68 AATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGC > 1:24432711/1‑68 AATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGC > 1:18164686/1‑68 aaTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTAATGGTCGGCGGCG > 1:23274428/3‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:10797081/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:16921288/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:28872260/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:8638179/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:23615556/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:23360474/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTG > 1:12929394/1‑59 TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGC > 1:25773887/1‑67 AATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGT > 1:20951032/1‑68 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTAGAAa > 1:10015169/1‑67 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAAa > 1:1558881/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGGTTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAC > 1:21823409/1‑67 TGACTACTCGATTGAAAAAGATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGA < 1:27789761/67‑1 TGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGGCGGGGGTAGAACTCTCAGCTGAA > 1:2733282/1‑68 TGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAA > 1:11139960/1‑68 TGACTACGCCATTGAAAAAGATTGAGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGA < 1:22200990/67‑1 ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAAATCTCCGCTGAATT > 1:6267959/1‑68 TACGCCATTTTACAAGATTGAGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGg < 1:15890724/68‑2 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGGCGGGTGTAGAAATCTCCCCTGAAATGCAgca > 1:3647050/1‑65 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCTACGGGT > 1:8353287/1‑42 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTCTAGAAATCTCCGCAGAAGTGCAga > 1:27346065/1‑65 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACA > 1:4400115/1‑67 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACA > 1:4921725/1‑67 TGAAAAAGATTGCGATTGTCGGCGGCGGCGCGACGGGT < 1:12034601/38‑1 ttAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTC < 1:20627711/66‑1 AGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTTGAAATCTCCGCTGAATTGCGCAACGCGGTCAA > 1:27631463/1‑67 ATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCCGAACTCGGTCAAGCA > 1:19061763/1‑68 ATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAAATCTCCGCTGAATTGCACAACGCGGTCAAGCg > 1:25114733/1‑67 GATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC < 1:25124955/68‑1 GATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC < 1:16241601/68‑1 GATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC < 1:25056074/68‑1 GATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC < 1:5271754/68‑1 GATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC < 1:144802/68‑1 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCCCA > 1:2410775/1‑68 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA < 1:4615449/68‑1 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA > 1:11853804/1‑68 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA < 1:26706801/68‑1 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA < 1:8726859/68‑1 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA > 1:10627696/1‑68 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA > 1:11560179/1‑68 GTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAG < 1:11306008/68‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:9448813/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:7072505/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:14411630/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:4912526/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:29730163/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:29715585/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:29399324/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:19732510/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:21876906/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:17420859/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:18986740/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:23808671/67‑1 GCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTAC > 1:11403588/1‑68 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGG < 1:10291528/68‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGG < 1:13577066/68‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGG < 1:19557077/68‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:19978254/67‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:29993311/67‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:17531850/67‑1 GCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT > 1:18082993/1‑68 GCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT > 1:25879601/1‑68 GCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT > 1:3975044/1‑68 GCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT > 1:20313314/1‑68 GCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT > 1:942062/1‑68 CGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT < 1:10697042/67‑1 CGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT < 1:12426100/67‑1 CGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT < 1:12427828/67‑1 GGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTT < 1:19302/67‑1 GGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTT < 1:20735288/67‑1 CCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161500‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTT > CP009273/1162077‑1162141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |