| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 375 (0.970) | 25 (0.080) | 11/92 | NT | 8.5% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 229 (0.720) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 180 total aligned reads displayed.
CCTCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1209115‑1209039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG > CP009273/1209089‑1209153 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:18576721/1‑68 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:14791280/1‑68 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:2853507/1‑68 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:29723831/1‑68 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:16427303/1‑68 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:19012572/1‑68 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:23966268/1‑68 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:1128464/1‑68 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:25747436/1‑68 CGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGC > 1:9092930/1‑67 GCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCG > 1:17331990/1‑67 cacTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:24283925/4‑68 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:27509500/1‑68 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:15389680/1‑68 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:13283690/1‑68 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:12040348/1‑68 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACTCAGCAACCTCGCTTTTCGAAATGCGCC < 1:21635945/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCG > 1:15944775/1‑68 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:17233820/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:10009094/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:14991640/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:26569244/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:26523427/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:143557/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:7946029/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:7742238/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:3827828/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:1283849/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:5359755/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:5952879/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:5996008/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:6048142/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:7026985/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAACTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCG > 1:24846628/1‑68 TTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGT < 1:29451986/68‑1 TTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGT < 1:27661195/68‑1 ATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCA < 1:11760626/68‑1 ATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCA < 1:24670450/68‑1 TGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGC < 1:12255488/68‑1 TGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGC < 1:22338317/68‑1 GTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCT < 1:21699153/68‑1 GTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATCCGCCGTCAAACATACTGCT < 1:3471053/68‑1 TTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTC < 1:22469347/67‑1 GACGGCGCATTATTTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATA < 1:1022397/68‑1 GACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATA < 1:31924840/68‑1 CGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCTAAATGCGCCGTCAAACATACTGCTCATAAT < 1:1096867/68‑1 CGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAAT < 1:13061159/68‑1 GGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATG < 1:21801495/68‑1 AATTGAATACGCAGCAACCTGGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGc < 1:22181435/68‑2 AATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGT < 1:28397525/68‑1 AATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCCCATAATGCGGGAGGT < 1:6899532/68‑1 TTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGT < 1:11353873/68‑1 TTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGT < 1:30494267/68‑1 AATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAAC > 1:2498097/1‑68 AATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAAC > 1:31364188/1‑68 ATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACA < 1:22609515/68‑1 ATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACA < 1:5579874/68‑1 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:8620895/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:853566/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:10759455/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:22714623/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:23363816/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:12257256/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:4834719/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:3902373/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:13469485/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:1312128/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:19542060/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:20976800/1‑68 TGCGCCGTCAAACATACTGCTCATAATGAGGGAGGTGTTGTGATAAAGCACGAGACGCTGGCGAACAG > 1:19113935/1‑68 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:30907225/68‑1 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:19428932/68‑1 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:1583274/68‑1 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:7515461/68‑1 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:23196252/68‑1 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG > 1:11838387/1‑68 GCGCCGTCAAACATACTGCGCATAATGCGGGAGGTGTTGGGATCAAGCACGAGACGCTGGCGAACAGG < 1:10511813/68‑1 GCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAA < 1:30443039/68‑1 CGTCAAACTTACTGCTCATAATGCGGGAGGGGTTGTGATCAAGCACGAGACGCTGGCGATCAGGAAGG < 1:25273708/68‑1 CGTCAAACATACTGCTCCTAATGCGGGAGGGGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:31082508/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:9310239/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:8973490/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:27040535/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:16730772/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:12690734/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:4849583/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:4279635/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:14039965/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:21135341/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:30876589/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:31379137/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:1455838/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:21472276/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:25749796/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:740276/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:28692660/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:3363901/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGAGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:6767848/68‑1 CGTCAAACATACTGCGCATAATGCGGGAGGTGTTGGGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:641345/68‑1 CGTCAAACAAACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:12632774/68‑1 CCTCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1209115‑1209039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG > CP009273/1209089‑1209153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |