| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 322 (0.840) | 24 (0.080) | 16/92 | NT | 7.2% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 354 (1.120) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
Only 100 of 817 total aligned reads displayed.
TCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGT > CP009273/187‑321 | tCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTg > 1:22685870/1‑68 (MQ=255)tCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTg > 1:23912631/1‑68 (MQ=255)tCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTg > 1:7677828/1‑68 (MQ=255) aTGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcg < 1:25431241/68‑1 (MQ=255) aaCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGt > 1:1208907/1‑67 (MQ=255) gCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTATCGGTGCGGGCTGACGCGTACAg < 1:28293275/68‑1 (MQ=255) gCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAg < 1:17307528/68‑1 (MQ=255) aTTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGa < 1:24449844/68‑1 (MQ=255) ttAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGaa > 1:25136155/1‑68 (MQ=255) aGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAac < 1:23131015/68‑1 (MQ=255) caccacCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAacac > 1:17598630/1‑68 (MQ=255) accaccATTACCACCCCCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:29089451/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTtttttctgtgtttgctgt > 1:3760100‑M1/1‑49 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:10698544/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:12557934/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:26485752/1‑68 (MQ=255) ccaccaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAg < 1:2782623/68‑1 (MQ=255) accaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGaa > 1:15479283/1‑68 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:16467162‑M2/1‑66 (MQ=255) accaccaccATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag < 1:6212903‑M2/67‑3 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGGTtttttctgtgtttgctgtacgcgtcagc > 1:19459013‑M1/1‑39 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc < 1:4492663‑M2/67‑4 (MQ=255) ccacaaccaTCACCATTACCACAGGTAACGGTGCGGGATGACGCGTACAGGAAACACAGAAAAAagc < 1:26753044‑M2/67‑4 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:4698435‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:15991618‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGGACAGGAAACACAGAAAAAagccc < 1:8576630‑M2/68‑6 (MQ=255) accaccaTCCCCATTACCACAGGTAACGGTGCGGGCTGACGAGTACAGGAAACACAGAAAAAagccc < 1:24115968‑M2/67‑6 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc < 1:29766168‑M2/68‑8 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:22097019‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:6661336‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:3447437‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:25605078‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:24719054‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:1286182‑M2/1‑61 (MQ=255) caccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc < 1:20209048‑M2/67‑8 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac > 1:3382150‑M2/1‑59 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac > 1:7502287‑M2/1‑59 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:27962339‑M2/67‑9 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:17793137‑M2/67‑9 (MQ=255) atcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTg < 1:8920204/68‑1 (MQ=255) tcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGa < 1:15236478/68‑1 (MQ=255) caccatTACCACAGGTAACGGTGCGGGCTGCCGCGTACAGGAAACACAGAAAAAAGCCCGCACCTgcc > 1:20940793/1‑66 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACTGAAAAAAGACCGCACCTTACAg > 1:13847851/1‑68 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacc > 1:24591161‑M2/1‑52 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg < 1:13072779/68‑1 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacct > 1:5993201‑M2/1‑51 (MQ=255) ccACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggt > 1:14313210‑M2/1‑46 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:31563772/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:9466642/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:24266217/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:5285864/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:18167511/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:18936561/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:20605649/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:6496449/1‑66 (MQ=255) acaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCt > 1:14987083/1‑68 (MQ=255) acaGCTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAACCCCGCACCTGCCAGTGCGGGCt > 1:29269409/1‑68 (MQ=255) gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt > 1:15755035/1‑68 (MQ=255) tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttt > 1:21228651/1‑68 (MQ=255) tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttt > 1:14766068/1‑68 (MQ=255) aCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtgtttttt > 1:30784788/1‑68 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttttt > 1:28717236/1‑68 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt > 1:18591559/1‑67 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt > 1:16953912/1‑67 (MQ=255) aggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt > 1:22370409/2‑67 (MQ=255) ggTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatgg > 1:22945267‑M1/1‑10 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACa > 1:29393382/1‑50 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc > 1:19751019/1‑68 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc > 1:11410535/1‑68 (MQ=255) gTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggt > 1:8279832‑M1/1‑9 (MQ=255) gTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggt > 1:23527472‑M1/1‑9 (MQ=255) gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc > 1:27206622/1‑67 (MQ=255) gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg > 1:27439539/1‑68 (MQ=255) tGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatgg < 1:13659088‑M1/66‑59 (MQ=255) tGCGGGCTtttttctgtgtttcctgtacgcggcagcccgcaccgttacctgtggtaatggtgatg < 1:7928881‑M1/65‑58 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:31487099‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:17181336‑M1/1‑7 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa > 1:21916133/1‑67 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa > 1:30537357/1‑67 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc < 1:14080664/68‑1 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:7217555‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:20502536‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:4133054‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:11120495‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:31361669‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggt < 1:32025048‑M1/67‑63 (MQ=255) gCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:11579536‑M1/67‑65 (MQ=255) gCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:9747094‑M1/67‑65 (MQ=255) gCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:19262136‑M1/67‑65 (MQ=255) gCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:3265608‑M1/67‑65 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:7041043‑M1/1‑2 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:20007748‑M1/1‑2 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:2612623‑M1/1‑2 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:28611065‑M1/1‑2 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:30175721‑M1/1‑2 (MQ=255) cTGCCGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGGTTTTTTTTTAGACCAAAg > 1:10060762/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCaaa < 1:31070653/67‑1 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg > 1:13227188/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg > 1:21419199/1‑68 (MQ=255) tGACGGGAAAAGCAAACACACAAAAAAGCCCGAACCTTACAGTGCGGGCTTTTTTTTTCGACCAAAgg < 1:27026095/68‑1 (MQ=255) | TCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGT > CP009273/187‑321 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |