| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 353255 | NA (NA) | 6 (0.020) | 3/98 | NT | NA | noncoding (61/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 353266 | NA (NA) | noncoding (72/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 293 total aligned reads displayed.
AGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCC > CP009273/353188‑353322 | aGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGAT > 1:21653112‑M1/1‑68 (MQ=255) ccGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATgcgctacgcgtttcaggcctacgggttcagtg > 1:31012378‑M1/1‑36 (MQ=255) cGGCCTGCGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:23239861/1‑68 (MQ=25) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:17615768/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:798176/1‑68 (MQ=35) ggCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAt < 1:2044141/68‑1 (MQ=37) gCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAt < 1:30873879/67‑1 (MQ=37) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATc < 1:31073158/67‑1 (MQ=39) cTACGTCGAGAACTGTACTCGTAGGCCTGATTAGCGTAGCGCATCAGTCAATTCCAGCCGCTGATCtg < 1:30300668/68‑1 (MQ=14) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtg < 1:2689503/68‑1 (MQ=40) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCt < 1:25892375/67‑1 (MQ=40) tACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtgt < 1:21573324/68‑1 (MQ=40) tACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtgt < 1:4686845/68‑1 (MQ=40) tACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtgt < 1:3228885/68‑1 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:27201170/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:31439272/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:31738180/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:3546743/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:2921589/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:27880791/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:27681180/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:21890252/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAACTGTGTc > 1:19603779/1‑68 (MQ=25) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:9130926/1‑68 (MQ=40) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:17856346/1‑68 (MQ=40) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:31861410/1‑68 (MQ=40) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAGCTGTGTCa > 1:29014214/1‑68 (MQ=25) gCACTGAACTCGTAGGCCTGATgcgctacgcttataaggcctacgagttcagtgctctacgtaggccg > 1:14197381‑M1/1‑22 (MQ=255) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCCGCCGCTGATCTGTGTCAGCg > 1:691887/1‑67 (MQ=255) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCgg > 1:23972958/1‑68 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:10461372/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:24097719/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:23603363/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:22942013/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:8287130/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:27323232/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:12221419/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:5981117/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:20335503/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:19967730/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:16604249/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATAAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:10718759/1‑67 (MQ=255) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCgg < 1:15593035/66‑1 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt < 1:3893256/68‑1 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:11900866/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:9090865/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:19197223/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:31647883/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:16181375/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:25213007/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAGCTTTGTCAGAGGcg > 1:10604350/1‑67 (MQ=11) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAc < 1:17139004/68‑1 (MQ=40) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAc < 1:16038790/68‑1 (MQ=40) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAc < 1:8580102/68‑1 (MQ=40) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAc < 1:20915034/68‑1 (MQ=40) tGAACTCGTAGGCCTGATAAGCGTACCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAc < 1:22001629/68‑1 (MQ=255) gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCtgga < 1:8927326/68‑4 (MQ=255) gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAGCTGTGTCAGCGGCTAcc > 1:16867968/1‑68 (MQ=25) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGt > 1:2444115/1‑68 (MQ=40) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGt > 1:568573/1‑68 (MQ=40) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGt > 1:9419805/1‑68 (MQ=40) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGt > 1:6713107/1‑68 (MQ=40) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGt > 1:26163474/1‑68 (MQ=40) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 1:20596357/68‑1 (MQ=40) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 1:11914006/68‑1 (MQ=40) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 1:18907887/68‑1 (MQ=40) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat > 1:29830475/1‑68 (MQ=40) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat > 1:15316413/1‑68 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattc > 1:2818350/1‑68 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattc > 1:28721763/1‑68 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattc > 1:7334881/1‑68 (MQ=40) gCCTGATgcgctacgcttagcaggcctacgagatcagtgctctacgtaggccggataaggcggtcacg < 1:11262407‑M1/68‑62 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:4135438/1‑68 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:22742598/1‑67 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:26471507/1‑67 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:27967267/1‑67 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:20762583/1‑67 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:30100816/1‑67 (MQ=40) ccTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacg > 1:21003287‑M1/1‑6 (MQ=255) ccTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacg > 1:30787233‑M1/1‑6 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:18010545/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:26704185/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:1449065/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:3728145/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:18807753/1‑67 (MQ=40) cTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgcc > 1:15473336‑M1/1‑5 (MQ=255) cTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgcc > 1:31122587‑M1/1‑5 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcattc > 1:4829404/1‑67 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcattc > 1:5062239/1‑67 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggctaaggcgttcacgccgcgt > 1:22221324‑M1/1‑1 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcat < 1:13671297‑M1/68‑68 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcat < 1:15148060‑M1/68‑68 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgca < 1:13371326‑M1/67‑67 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgca > 1:14778814‑M1/1‑1 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgca < 1:12763108‑M1/67‑67 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgca < 1:22594741‑M1/67‑67 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGcc > 1:11807037/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:9494441/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:614081/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:24753642/67‑1 (MQ=255) | AGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCC > CP009273/353188‑353322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |