| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 296 (0.770) | 452 (1.170) | 69/112 | NT | 60.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
Only 100 of 901 total aligned reads displayed.
ATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAA > CP009273/360037‑360171 | aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCa > 1:17468491/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:9033039/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:3219716/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:25780275/1‑68 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaat < 1:7823479‑M1/3‑1 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaat > 1:27924379‑M1/66‑68 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaat < 1:27327448‑M1/3‑1 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaat > 1:26633412‑M1/66‑68 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaat > 1:16708966‑M1/66‑68 (MQ=255) cagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaatt < 1:17326561‑M1/4‑1 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt > 1:10254257/1‑66 (MQ=255) taaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTg < 1:26097891‑M1/8‑1 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:9701821/1‑68 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:13600558/1‑68 (MQ=255) aaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGc > 1:20132118‑M1/59‑68 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:12012336/68‑1 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:3368565/68‑1 (MQ=255) acgaaaggcccaggctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAg > 1:28260566‑M1/57‑68 (MQ=255) cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGt > 1:14124921‑M1/56‑68 (MQ=255) cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGt < 1:19936694‑M1/13‑1 (MQ=255) cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGt < 1:30379476‑M1/13‑1 (MQ=255) cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGt < 1:31165024‑M1/13‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:13779800/68‑1 (MQ=255) aaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGttt < 1:16194201‑M1/15‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:4028151/1‑68 (MQ=255) cgcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATg > 1:29186370‑M1/51‑68 (MQ=255) aGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg > 1:23175531/1‑68 (MQ=255) gcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATg < 1:19267883‑M1/18‑1 (MQ=255) gcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATg < 1:27594616‑M1/18‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:752604/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:31720822/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:14673104/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:14443078/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:21248670/1‑68 (MQ=255) aGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgg > 1:8640681/1‑67 (MQ=255) aGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgg < 1:13331970/67‑1 (MQ=255) aGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgg > 1:17141795/1‑67 (MQ=255) ctttcgactgagcctttcgttttatttgatgcctggggaattAATTACTGGAAGTTTATggcgggcg < 1:29546101‑M1/25‑1 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:10064767/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:25124397/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:21959698/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg < 1:16943008/67‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt > 1:27077734/1‑65 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGTCAGTTTATGGCGGGCGTCCTg < 1:23607524‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:6801124‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:28820043‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:26892501‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:10992143‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:22751380‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:20915477‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGc > 1:15522097‑M1/38‑68 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGc > 1:4390289‑M1/38‑68 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTAGCAGTTTATGGCGCGCGTCCTg < 1:4706810‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTACTGGCAGTTTATGGCGGGCGTCCTg < 1:8257059‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTAATGTAAGTTTATGCCGGGCGTCCTg < 1:23361644‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTAATGGAAGTTTATGGCGGGCGTCCTg < 1:2536818‑M1/30‑1 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc < 1:20542085/68‑1 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc < 1:5193341/68‑1 (MQ=255) ctgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCAGccc < 1:18846871‑M1/33‑1 (MQ=255) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc > 1:10747780/1‑67 (MQ=255) gcctttcgttttatttgatgcctggggaattAATTCCTGGAAGTTTATGGCGGGCGTCCTGCCCGcc < 1:23869749‑M1/36‑1 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAcc > 1:9357472‑M1/30‑68 (MQ=255) tttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc > 1:6168430‑M1/29‑68 (MQ=255) tttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCAccc > 1:24752894‑M1/29‑68 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:6426642/1‑66 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:30168967/1‑66 (MQ=255) tGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCt > 1:15850662/1‑67 (MQ=255) tGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCt < 1:16424590/67‑1 (MQ=255) tGTCAAACATGACAATTCCGATCCCAAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCt < 1:5524621/67‑1 (MQ=255) gttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCg < 1:19806084‑M1/44‑1 (MQ=255) tttatttgatgcgtgggtatttAATTCCGGGATGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCggg > 1:2852540‑M1/23‑68 (MQ=255) aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCggg > 1:14988806/1‑67 (MQ=255) aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCggg > 1:1847433/1‑67 (MQ=255) aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCggg > 1:20255517/1‑67 (MQ=255) tttatgcctggttaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGtt > 1:193994‑M1/18‑68 (MQ=255) ttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGtt < 1:5832338‑M1/51‑1 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGtt < 1:31424814/68‑1 (MQ=255) tgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTg > 1:30853741‑M1/17‑68 (MQ=255) gatgcctgggtaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc > 1:25653252‑M1/16‑68 (MQ=255) gatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc > 1:2221151‑M1/16‑68 (MQ=255) gatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc > 1:8017457‑M1/16‑68 (MQ=255) gatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc > 1:26481701‑M1/16‑68 (MQ=255) atgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt < 1:1135907‑M1/54‑1 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt > 1:17861539‑M1/14‑67 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt > 1:12668719‑M1/14‑67 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt > 1:11542047‑M1/14‑67 (MQ=255) gcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTc < 1:7320460‑M1/56‑1 (MQ=255) gcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTc < 1:11209071‑M1/56‑1 (MQ=255) gggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc < 1:13131375‑M1/61‑1 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc > 1:18141635/1‑68 (MQ=255) ggaattAATTCCTGGCATTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc > 1:12422179‑M1/7‑67 (MQ=255) ccccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt > 1:495418/1‑67 (MQ=255) aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt > 1:27758489‑M1/5‑67 (MQ=255) aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt > 1:29800611‑M1/5‑67 (MQ=255) aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt > 1:6936213‑M1/5‑67 (MQ=255) aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt > 1:3743798‑M1/5‑67 (MQ=255) aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt > 1:24475083‑M1/5‑67 (MQ=255) aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt > 1:24049521‑M1/5‑67 (MQ=255) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCa > 1:7115609/1‑68 (MQ=40) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa < 1:21589547/68‑1 (MQ=37) | ATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAA > CP009273/360037‑360171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |