New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360168 =	NA (NA)	54 (0.170)	11/94	NT	NA	intergenic (‑102/+493)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	360191 =	NA (NA)					intergenic (‑125/+470)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCC  >  CP009273/360101‑360174                                                                    |       cccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc        >  1:21089305/1‑68 (MQ=255) attAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc        <  1:11948116‑M1/65‑1 (MQ=255)  ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCa       >  1:7115609/1‑68 (MQ=40)   tAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACACTCCGGGCCGTTGCTTCGCAACGTTCaa      <  1:14423339‑M1/67‑1 (MQ=255)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:21589547/68‑1 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:21515200/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:2976403/68‑1 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:3819479/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:18017418/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:24146001/68‑1 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:7133901/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:2539074/68‑1 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:26890711/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:7298375/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:7719756/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:24980805/68‑1 (MQ=255)     aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:14568596/1‑67 (MQ=35)     aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    <  1:24247928/68‑1 (MQ=35)     aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    <  1:127602/68‑1 (MQ=35)      ttCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGCGTCGCAACGTTCAAAt    >  1:1356400/1‑67 (MQ=11)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCTGGCCGTTCCTTCGCAACGTTCAAAt    >  1:28353722/1‑67 (MQ=255)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:22355298/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:25975826/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:25604219/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:21772915/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:10110201/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:23025990/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:24347903/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:24807742/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:28649095/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:29298196/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:31917003/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:18773927/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:18679842/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:17018708/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:17018693/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:15197052/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:14644629/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:12106604/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGCGCGTCCTGCCAGCCACCCTCCGGGCCGATGCATCGCAACGTTCAAAt    >  1:13451483/1‑67 (MQ=11)      ttCCTGGCAGTTTATGGAGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:5678288/1‑67 (MQ=18)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:11317934/1‑68 (MQ=14)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAGATcc  >  1:22019233/1‑68 (MQ=14)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:4493175/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:9712069/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:12247341/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:12471669/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:16945307/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:65552/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:1744492/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:5237271/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:25453937/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:19657153/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:19958823/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:20075441/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:20538518/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:22339406/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:27401931/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:272171/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGATTAGAAACGTTCAAATc   >  1:20379201/1‑67 (MQ=11)       tCCTGGCAGTTTATGGCGGGCGTAATTCCCGCAACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:16960937/1‑68 (MQ=11)                                                                    |       CCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCC  >  CP009273/360101‑360174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.