| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1203261 | 295 (0.770) | 110 (0.400) | 26/80 | NT | 39.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 122 (0.440) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
Only 100 of 738 total aligned reads displayed.
CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATT > CP009273/1203194‑1203328 | cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:21472960‑M1/68‑2 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa < 1:1775007/68‑1 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc > 1:23131675/1‑68 (MQ=255) ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct < 1:2777375‑M1/68‑5 (MQ=255) ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct < 1:22894102‑M1/68‑5 (MQ=255) ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc < 1:31370540/67‑1 (MQ=255) tGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:1348433‑M1/68‑6 (MQ=255) tGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctatg < 1:3236539‑M1/68‑6 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaa < 1:25528445/68‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa < 1:23573941‑M1/22‑1 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta < 1:12781786‑M1/67‑11 (MQ=255) tatCAAATCGGATGGCACTGTGAAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 1:27509304‑M1/68‑12 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:31731230‑M1/42‑65 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa < 1:787736‑M1/27‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa < 1:1091324‑M1/27‑1 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta > 1:16511161‑M1/1‑54 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt > 1:23808723/1‑67 (MQ=255) aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg > 1:8021522‑M1/1‑51 (MQ=255) cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca > 1:9645606/1‑68 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:10091959/68‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaacag > 1:16862214‑M1/30‑66 (MQ=255) tGGCACTGTGTAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 1:17969198/68‑1 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 1:18485561‑M1/67‑23 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 1:6277773‑M1/67‑23 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 1:876614/68‑1 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 1:1663594/68‑1 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 1:12569211/68‑1 (MQ=255) tgttatttcttcattttcatacacgTTGGTTTGTGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:930680‑M1/26‑68 (MQ=255) tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:11544328‑M1/26‑68 (MQ=255) tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:26500958‑M1/26‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGGAAGGAGCAAAACTCAATGCCGCAACGGCTAc > 1:22671808/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt > 1:5501534‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt > 1:14627496‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:26738489/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:30051729/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:8907962/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:9109911/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:9814285/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:25377190/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:21798891/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:11216317/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:12082713/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:20459725/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACATTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt > 1:3035426‑M1/1‑41 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:22151013‑M1/25‑68 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:16283730‑M1/25‑68 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:30983246‑M1/25‑68 (MQ=255) ctttgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:10576608/65‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:1024189/68‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:14262051/68‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:5841918/68‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:26922228/68‑1 (MQ=255) cTGTGCAAACGGCTCGCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:6897234/68‑1 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:13909350‑M1/23‑68 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:1548617/1‑68 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:23361330‑M1/68‑36 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:6106506‑M1/68‑36 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:27196928‑M1/16‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAATGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:2014646/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:26209696/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:4279001/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:5265475/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:2496645/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:7688295/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:19921915/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAAGCAGCAACGGCTACATTAGGACGc > 1:24092558/1‑68 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 1:3856034‑M1/67‑41 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg < 1:29004966/68‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt < 1:1720608/68‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc > 1:31983793/1‑68 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 1:29780201‑M1/4‑68 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:27997387‑M1/65‑1 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 1:15877963‑M1/4‑68 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:29364763/68‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:7387728/68‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:13178497/68‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:573037/68‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:19182474/68‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:343682/68‑1 (MQ=255) ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcca < 1:25948916‑M1/68‑53 (MQ=255) TTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt > 1:31167664‑M1/1‑68 (MQ=255) TGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt > 1:8477277‑M1/1‑67 (MQ=255) tttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag > 1:30786384‑M1/1‑12 (MQ=255) TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata < 1:4981982‑M1/67‑1 (MQ=255) TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTACGACGCACCGGTTTCATAGCtata < 1:11907063‑M1/67‑1 (MQ=255) ttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag > 1:20721290‑M1/1‑11 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg > 1:471340‑M1/1‑68 (MQ=255) GGGAGAAGGAGCAACACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 1:6513289‑M1/1‑68 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 1:24557003‑M1/1‑68 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 1:28850424‑M1/1‑68 (MQ=255) GAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt > 1:1234482‑M1/1‑67 (MQ=255) agaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg < 1:22489450‑M1/67‑62 (MQ=255) agaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg < 1:20606878‑M1/67‑62 (MQ=255) agaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctg > 1:21061529‑M1/1‑6 (MQ=255) AGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt > 1:19423091‑M1/1‑67 (MQ=255) AGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa < 1:18918972‑M1/68‑1 (MQ=255) aGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctga < 1:16359654‑M1/68‑66 (MQ=255) aGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct < 1:1482106‑M1/66‑64 (MQ=255) gctctgcattacctgtttgtgtcccggttccttggccatcagccactccgccaacaggctggctgaaa > 1:3153170‑M1/1‑1 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa > 1:28689498‑M1/1‑1 (MQ=255) | CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATT > CP009273/1203194‑1203328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |