| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2749471 | 273 (0.710) | 23 (0.070) | 9/90 | NT | 9.8% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 206 (0.670) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
Only 100 of 738 total aligned reads displayed.
TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCG > CP009273/2749404‑2749538 | tttGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACG > 1:22765715‑M1/1‑68 (MQ=255) tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:27351345/1‑68 (MQ=255) tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:13477911/1‑68 (MQ=255) ccGCGAAGTCCGAAGAGAACTATTTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACTAAAAGc < 1:12371424/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:29961920/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:28376538/68‑1 (MQ=255) aGTGCGAAGAGAACTAATTAAATCCGAAGCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:558474/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:16172364/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:28709749/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAGAAGCTCTATTGt < 1:27459862/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:10754249/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:18008692/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:12806799/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:9106337/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:15435998/67‑1 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGtaaacaatagagcttttcgt > 1:2557186‑M1/1‑48 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:24280368‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:22597408‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:8368766‑M2/68‑4 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:15678292‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:24434943‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:31778212‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:26174462‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:18286095‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:11810811‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:3134043‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:16485644‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:29131252‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgg > 1:24837984‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgg > 1:14777197‑M2/1‑61 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:3166327‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:16585104‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:19190836‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:14477578‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:10096196‑M2/1‑60 (MQ=255) tAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcc > 1:9811757‑M2/1‑59 (MQ=255) aaTTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcct > 1:27964822‑M2/1‑58 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctat > 1:4300263‑M2/1‑56 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:5952224/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:30761562/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:14217649/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:22917306/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:10279144/1‑68 (MQ=255) tAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:6148392/1‑67 (MQ=255) tCCGCACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:8530223/1‑68 (MQ=255) tCCGACCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa < 1:10008952/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttgggccgttcaatg > 1:30650797‑M1/1‑34 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:5050686/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:2495061/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTCTTTACGTTGGGCCTAAACGCa < 1:25765004/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCACTATTGTTAACGTTGGGCCAAAACGCa > 1:18863847/1‑68 (MQ=255) cGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatggg > 1:23535432‑M2/1‑49 (MQ=255) aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgag < 1:25348644/68‑1 (MQ=255) ttttAGGCCCATTGATAGGCCCAACGAAAAGCGCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACt < 1:20115011/68‑1 (MQ=255) ttggCCCATTGATAGGCCCAACGAAATGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTccc < 1:6700240/66‑1 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:2601964/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:17652237/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:20749568/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:17329468/1‑68 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:3281611/1‑68 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:6418716/1‑68 (MQ=255) ccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg < 1:9536874/67‑1 (MQ=255) ttGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCaa < 1:7584666/68‑1 (MQ=255) cgttTAGGCCCAACGAAAAGCTCTATTGTTTTCGTTGGGCCTAAACGCAGGGAGGCTACCCATGGCaa < 1:3530698‑M1/64‑1 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg > 1:940846/1‑68 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg < 1:29793409/68‑1 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg > 1:29577991/1‑68 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaa > 1:10567141/1‑68 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaa > 1:11518153/1‑68 (MQ=255) aagCCCCAACGAAACGCTCTATTGGTTAcgcggggcctatcaatgggcctaaaaggttcggatttaa > 1:23896028‑M2/2‑28 (MQ=255) ggCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaatta > 1:31551166‑M1/1‑9 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggattttattag > 1:4635659‑M1/1‑8 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:23308094‑M1/1‑8 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:26887476‑M1/1‑8 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:18554316‑M1/1‑8 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:30401334‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:22270218‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:12417454‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAGGGCATGaaaaa < 1:15015892‑M1/67‑1 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:6516710‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:13867628‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:215407‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:1966639‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:19424581‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:27830669‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagctattcgttgggccgatcaatgggcctaaaaggttcggatttaattagt > 1:4177961‑M1/1‑7 (MQ=255) CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAAcc < 1:3860452‑M1/68‑1 (MQ=255) CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAAcc < 1:20504152‑M1/68‑1 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:8951347‑M1/1‑6 (MQ=255) CCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa < 1:19765130‑M1/68‑1 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:7914665‑M1/68‑66 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:8223200‑M1/68‑66 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:11029181‑M1/68‑66 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:21798896‑M1/68‑66 (MQ=255) ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc > 1:15987582‑M1/1‑68 (MQ=255) ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc > 1:28947123‑M1/1‑68 (MQ=255) cGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct < 1:5384306‑M1/68‑67 (MQ=255) gtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct > 1:27178223‑M1/1‑1 (MQ=255) GAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg < 1:25184630‑M1/68‑1 (MQ=255) GAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg < 1:12997917‑M1/68‑1 (MQ=255) | TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCG > CP009273/2749404‑2749538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |