| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3031308 = | 379 (0.980) | 21 (0.060) | 12/98 | NT | 7.7% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 171 (0.510) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
Only 100 of 679 total aligned reads displayed.
ATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031242‑3031375 | ataatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGt‑‑‑t > 1:3452565/1‑67 (MQ=255)ataatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGt‑‑‑t > 1:25125482/1‑67 (MQ=255) tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat > 1:6648249‑M1/67‑67 (MQ=255) tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:17609065‑M1/1‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑tgctg < 1:10043670/68‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑tgctg < 1:30949487/68‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑tgctg < 1:11506291/68‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑tgctg < 1:11844429/68‑1 (MQ=255) tgcgccgttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:7262133‑M1/1‑1 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑tgctg > 1:7934418/1‑67 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑tgctg > 1:8968930/1‑67 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑tgctg > 1:14333462/1‑67 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGcc > 1:21039306/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGcc > 1:8234698/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGcc > 1:18745995/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGcc > 1:3869867/1‑68 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctg > 1:25231178‑M1/64‑68 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctg > 1:13818034‑M1/64‑68 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgct < 1:2725950‑M1/4‑1 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctgc > 1:19948747‑M1/62‑67 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGcc > 1:18428011‑M1/62‑68 (MQ=255) gTTCCTTCGCGCAAAGCGTTGTAAAGGATCTCACCGGCATTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAgg > 1:27602825/1‑67 (MQ=255) gTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAgg > 1:10583831/1‑67 (MQ=255) gTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAgg < 1:12652118/67‑1 (MQ=255) gTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAgg < 1:28110853/67‑1 (MQ=255) ttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAgg > 1:19609623‑M1/59‑68 (MQ=255) tactacgccagccggtgattacgcagagctcaagaactggaacgcagtgttaaacgtaTGCTGCCAgg > 1:7052913‑M1/59‑68 (MQ=255) tCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGgca > 1:15471903/1‑68 (MQ=255) tCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGgc < 1:25938617/67‑1 (MQ=255) tCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGgc < 1:14978102/67‑1 (MQ=255) cTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGgcagc < 1:17957081/68‑1 (MQ=255) cTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGgcagc < 1:29448611/68‑1 (MQ=255) cTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGgcagc < 1:16096709/68‑1 (MQ=255) cTTCGCGAAAAGCGTTGAAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGgcagc < 1:29966335/68‑1 (MQ=255) ttCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGgcagca > 1:13320313/1‑68 (MQ=255) ttCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGgcagca < 1:6252144/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATAc < 1:9684411/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATAc < 1:23466530/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATAc < 1:14743260/68‑1 (MQ=255) cgcgaaggaacgcggattattgtggtcggtgatttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATAc < 1:29249840‑M2/25‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:4163317/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:23834962/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:25554328/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:26701459/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:4990942/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:11250985/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:20454095/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:18998092/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:17473083/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:31773429/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:8859963/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:12348296/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGAGCTCCACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:12923087/68‑1 (MQ=255) cggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATAc > 1:1216375‑M1/47‑65 (MQ=255) cGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCt < 1:22316112/62‑1 (MQ=255) tGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACt < 1:2406459/67‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGt > 1:20708125/1‑68 (MQ=255) aaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCTGCCAGGGCAGCATACCTTTAACACTGc < 1:1667982/68‑1 (MQ=255) aGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGtt > 1:2850464/1‑67 (MQ=255) aGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGtt > 1:2888876/1‑67 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:21932089/1‑68 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:31428416/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:26328239/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:23186975/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:27858455/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:7665/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:2843283/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:15845002/1‑68 (MQ=255) ctcAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGtt < 1:16510665/68‑1 (MQ=255) catcGGCCTATTCGACGCGGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:15652175/65‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGAAGCATACCTTTAAAACTGCGTGCCAGTTCt < 1:8615958/68‑1 (MQ=255) aCGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:3599296/1‑67 (MQ=255) aCGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:10378235/1‑67 (MQ=255) ttttCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:1934605/68‑1 (MQ=255) tttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:13968491‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:16287531‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:5594956‑M2/57‑1 (MQ=255) ttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:30660372‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:15262562‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:2699743‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:17268034‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:4382483‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:18223923‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:21451082‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGC‑‑‑TGCTGCCAGTGCAGCATACCTTTAACACTGCGATCCAGTTCTTGCGCACTg < 1:30247746‑M2/57‑1 (MQ=255) cgacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:4653180‑M2/9‑68 (MQ=255) gacgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:5377233‑M2/8‑67 (MQ=255) acgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:16845088‑M2/7‑66 (MQ=255) cgccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:24365197‑M2/63‑1 (MQ=255) gccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:6046399‑M2/5‑67 (MQ=255) gccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:22116967‑M2/5‑67 (MQ=255) gccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:4842464‑M2/5‑67 (MQ=255) gccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:333644‑M2/5‑67 (MQ=255) gccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:9234726‑M2/5‑67 (MQ=255) gccgCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:10923353‑M2/5‑67 (MQ=255) gttaaaggtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:24746018‑M1/11‑67 (MQ=255) cAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGc < 1:22741990/68‑1 (MQ=255) aggtaTGCTGCCAGGGCAGCATACCTTTAACGCTGGGTTCCAGTTCTTGCGCACTGCGTACTCCCCgg < 1:20078432‑M1/63‑1 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:29689509‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:4522652‑M1/68‑1 (MQ=255) | ATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGT‑‑‑TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031242‑3031375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |