New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 376748 =NA (NA)19 (0.060) 10/94 NT NA intergenic (‑33/‑59) yaiX/insC1 pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA
?CP009273 376768 = NA (NA)intergenic (‑53/‑39) yaiX/insC1 pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA

Only 100 of 109 total aligned reads displayed.

TAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAG  >  CP009273/376701‑376780
                                                                   |            
tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              >  1:6228843/1‑68 (MQ=255)
tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              <  1:24817157/68‑1 (MQ=255)
tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              <  1:10438816/68‑1 (MQ=255)
tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              >  1:4254968/1‑68 (MQ=255)
tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              <  1:29153825/68‑1 (MQ=255)
tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              <  1:14952011/68‑1 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              >  1:28865377/1‑67 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt             <  1:3320383/68‑1 (MQ=255)
  aaCTCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:30764261/68‑1 (MQ=255)
  aaCGCATTATTACTAGAGTGGCCCCCTGAATGTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:18356770/68‑1 (MQ=14)
  aaCGCATAATTTCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:21775078/68‑1 (MQ=255)
  aaCGCATAATTACTAGTCTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:6158509/68‑1 (MQ=255)
  aaCGCATAATTACTAGCGTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:23447476/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGTCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:19661091/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCGCTGAATCTCCAGACATCCAATATCACTTAAATAAGTGATAGTc            <  1:29307628/68‑1 (MQ=17)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:27358970/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:22844409/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:7924850/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:22310400/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:7814809/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:2396433/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:25077550/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:26468486/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:26965749/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:6539763/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:27075494/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:32043454/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:27631183/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:27743672/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:5170708/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:4157425/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:29294185/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:7097827/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:29765656/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:30087986/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:3809709/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:30186556/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:3677497/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:14499428/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:13149654/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:19471516/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:1374082/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:19722844/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:12924034/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:20063269/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:18291119/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:20592443/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:11503014/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:10355233/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:20614807/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:15132842/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:20763931/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:16926193/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:15388008/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCACTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:16484848/68‑1 (MQ=255)
   aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACGACCAATATCACTTAAATAAGTGATAGTCt           <  1:7616550/68‑1 (MQ=255)
   aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCt           <  1:25591310/68‑1 (MQ=255)
   aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCt           >  1:12486274/1‑68 (MQ=255)
   aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCt           <  1:22040157/68‑1 (MQ=255)
   aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCt           >  1:8067236/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:11691471/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:10040442/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:21787099/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:17996535/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:20144019/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:19930510/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:26269336/1‑68 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:28693636/68‑1 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:28124387/68‑1 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         >  1:5982240/1‑68 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         >  1:27833956/1‑68 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         >  1:11585558/1‑68 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:23355852/68‑1 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         >  1:31931888/1‑68 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:28282115/68‑1 (MQ=255)
      cATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa        >  1:17745502/1‑68 (MQ=255)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa        <  1:15705030/67‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:1944279/68‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:5942241/68‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:31984687/68‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:13947056/68‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:8996219/68‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:15467924/68‑1 (MQ=40)
        tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATa      <  1:6847052/68‑1 (MQ=39)
         cgttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       >  1:13326235/3‑66 (MQ=14)
         aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       >  1:23084200/1‑66 (MQ=37)
          aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt    <  1:8820652/68‑1 (MQ=35)
          aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt    >  1:927506/1‑68 (MQ=35)
          aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt    >  1:8274631/1‑68 (MQ=35)
          aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt    >  1:3718778/1‑68 (MQ=35)
           ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:10345221/59‑1 (MQ=33)
           ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:29394596/1‑68 (MQ=33)
           ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:26200996/1‑68 (MQ=33)
           ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:23529/1‑68 (MQ=33)
           ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:21826153/1‑68 (MQ=33)
           ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:16117079/1‑68 (MQ=33)
            tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg  <  1:6091892/68‑1 (MQ=31)
            tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg  <  1:22011393/68‑1 (MQ=31)
            tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg  <  1:21764041/68‑1 (MQ=31)
            tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg  <  1:15177338/68‑1 (MQ=31)
                                                                   |            
TAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAG  >  CP009273/376701‑376780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.