| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1092806 = | NA (NA) | 7 (0.020) | 5/106 | NT | NA | intergenic (+521/+215) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093009 = | NA (NA) | intergenic (+724/+12) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
Only 100 of 191 total aligned reads displayed.
ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGC > CP009273/1092973‑1093058 | atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTGTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:10063818/1‑68 (MQ=14)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:23446899/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:7944257/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:4229183/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:2985815/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:28684912/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:28245431/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:25262039/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:24932746/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:10020114/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:23323751/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:20043742/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:19787532/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:18792413/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:17598567/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:16284488/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:13856423/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:13085876/1‑68 (MQ=31)atatACGAAAAAAAAGCCCGTAATTTCGTACGCGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:6466622/1‑68 (MQ=255) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTGTTCTTTAAATATGGGGGTGAGGGGGGGagtg > 1:22028691/1‑63 (MQ=1) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCTGTGAGGGGGGGATTCg > 1:31839678/1‑67 (MQ=18) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGTTTCGa > 1:3039924/1‑68 (MQ=25) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTcca > 1:24265632/1‑66 (MQ=14) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:23211724/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:3087856/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:20689559/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:31259443/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:19455743/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:21877064/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:31543803/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:3258388/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:11685640/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:25177464/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:679155/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:8501588/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:15668837/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:9455927/1‑68 (MQ=35) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:27866725/1‑68 (MQ=35) acaCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:12283084/3‑68 (MQ=14) aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCgca > 1:29736863/1‑65 (MQ=18) aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTATTTAAATTTGGCGGTGAGGGGGGGGTTCGaa > 1:2771440/1‑67 (MQ=11) cGAAAAAAAAGCCCGTACTTTCGTCCGAGCTCTTCGGTAATTATGGCGGTGAGGGGTGGATTCGagca > 1:4922460/1‑65 (MQ=11) cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:18983538/68‑1 (MQ=40) cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:22509995/68‑1 (MQ=40) cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:14899115/68‑1 (MQ=40) cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:16390964/68‑1 (MQ=40) cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:24824697/68‑1 (MQ=40) cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:16754100/68‑1 (MQ=40) cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:24787581/68‑1 (MQ=40) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:15429267/68‑1 (MQ=40) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:29647476/68‑1 (MQ=40) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:13661180/68‑1 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGCAcgc > 1:31375359/1‑65 (MQ=255) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:5612339/68‑1 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:19005175/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:4018006/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:29441550/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:22650854/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:1444296/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCCAAccca > 1:9799067/1‑67 (MQ=255) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:469033/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:27228300/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:17871170/67‑1 (MQ=40) aaaaaaaCCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:1597942/67‑1 (MQ=255) aaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCg > 1:26708805/1‑68 (MQ=40) aaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCg > 1:8276987/1‑68 (MQ=40) aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt < 1:17752134/68‑1 (MQ=40) aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt < 1:24531122/68‑1 (MQ=40) aaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt > 1:13371131/1‑67 (MQ=40) aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc < 1:26615232/68‑1 (MQ=40) aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc < 1:18394539/68‑1 (MQ=40) aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc < 1:13842808/68‑1 (MQ=40) aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc < 1:8779986/68‑1 (MQ=40) aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg > 1:10782904/1‑68 (MQ=40) aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg > 1:20434649/1‑68 (MQ=40) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAAACggt > 1:22257123/1‑66 (MQ=255) ccctACTTTCCTACGAGCTATTCTTTAAATATGGCGGGGAGGGGGGGATTCGAACCCCCGATACGtt < 1:1036161/64‑1 (MQ=11) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:21817991/67‑1 (MQ=37) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:16310105/67‑1 (MQ=37) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt < 1:25354570/66‑1 (MQ=37) cctACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:30661019/66‑1 (MQ=14) cctACTTTCGTACGAGCGCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:31601296/66‑1 (MQ=9) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:16111379/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:15283679/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:15169776/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:7285596/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:9233669/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:15466666/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:25418676/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:6294899/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:6003583/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:17042489/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:17069153/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:21367359/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:30490953/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:11545216/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:23782721/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:130446/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:25745935/68‑1 (MQ=35) cGTACTATCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:21547540/68‑1 (MQ=25) | ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGC > CP009273/1092973‑1093058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |