| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1426905 | NA (NA) | 18 (0.050) | 10/96 | NT | 100% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 0 (0.000) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
Only 100 of 131 total aligned reads displayed.
ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 | ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:6054676‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:4581537‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:28545538‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:25974851‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:25469172‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:25074362‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:24877460‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:18918604‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:17537066‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:14831489‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:14783771‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:14585355‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:14126100‑M2/1‑1 (MQ=255)ttcaacagtgatgaggcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:10537231‑M2/1‑1 (MQ=255) tcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaccggtttatgacgtggCt > 1:14101135‑M2/67‑68 (MQ=255) tcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCt > 1:17455704‑M2/67‑68 (MQ=255) caacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:3472668‑M2/3‑1 (MQ=255) aacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTc < 1:25379495‑M2/4‑1 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:21238883‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:20091407‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:19621665‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:19620480‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc < 1:22894826‑M2/5‑1 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:5116568‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:18566186‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:30552339‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:30551196‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:2381492‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:641818‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc < 1:25373965‑M2/5‑1 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:8235663‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:15292969‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:8420599‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:26709759‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:2583478‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:13163725‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:13830580‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttaagacgtggCTTcc > 1:30747916‑M2/64‑68 (MQ=255) cagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:10825174‑M2/63‑68 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:28408086‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:9753739‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:1393428‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:9321242‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:8264954‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:7740564‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:26870625‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:27859046‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:10451527‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:3738911‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:5516040‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:5187873‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:1055235‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:420288‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:31455258‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:3150448‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:3899433‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:372771‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:19632094‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:12627317‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:14886666‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:16576918‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:11801104‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:20529724‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:21316539‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:22447973‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:11522944‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:23297023‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaaatatatatgacgtggCTTCCg > 1:3150470‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaaaggtttatgacgtggCTTCCg > 1:30611673‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagataataggggtaaaacggtttatgacgtggCTTCCg > 1:1249202‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcggtgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:21661845‑M2/62‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCgg < 1:6871868‑M2/7‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGc < 1:23217645‑M2/8‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:15723158‑M2/59‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:1927250‑M2/59‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:20056484‑M2/59‑67 (MQ=255) tgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCGATAACCTGGTAACATGTTCGGGTa > 1:30996501‑M2/36‑68 (MQ=255) gatcatcggggtaaaacggtttttgacgtggCTTCCGGCGATTACCAGGTAACATTTTCCGGTGACgg > 1:10786588‑M2/32‑68 (MQ=255) atcatcggggtaaaacggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACgg > 1:8678461‑M2/31‑67 (MQ=255) cggggtaaaacggtttatgacgtggCTTCCGGCGGTAACCAGGTAACATTTTCCGGGAACGGGccggg > 1:17746408‑M2/26‑66 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGaaat > 1:7705032‑M2/17‑68 (MQ=255) ggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCGGGTAACGGACCGAGTTCAGaaataa > 1:21987748‑M2/15‑68 (MQ=255) tgacggggCGTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcg < 1:15065215‑M2/60‑1 (MQ=255) gacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgc > 1:29983202‑M2/8‑68 (MQ=255) acgtggCTTCCGGCGATAGCCAGGGAACAGTTTCCGGTTACGGACCGAGTTCAGAAATAAATAAcgcg > 1:6233850‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGGCCGAGTTCAGAAATAAATAAcgcg > 1:4236792‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:5908248‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:6659929‑M2/7‑68 (MQ=255) ggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCg > 1:23230593‑M2/3‑67 (MQ=255) cccTTCGGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:7587033/68‑1 (MQ=18) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:11072537/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:16485947/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:26237562/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:11109031/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:17364301/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:27084639/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:5159142/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:11715925/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:26200185/68‑1 (MQ=33) ccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGcc < 1:22185322/68‑1 (MQ=35) | ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |