| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1546399 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (72/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1546424 | NA (NA) | noncoding (97/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 598 total aligned reads displayed.
ATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACG > CP009273/1546358‑1546491 | aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:13272923‑M2/1‑67 (MQ=255) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:31999776/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:15967525/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:19635312/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:4652945/1‑68 (MQ=31) gCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAAt > 1:22155743/1‑68 (MQ=25) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:27719957/1‑67 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:18919241/1‑67 (MQ=40) gTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:30610416/1‑68 (MQ=40) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:29326786/66‑1 (MQ=40) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:28528280/66‑1 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:17216385/1‑64 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:12444362/68‑1 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:26668004/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt > 1:13846800/1‑68 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:16742654/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:2918696/68‑1 (MQ=255) gtgtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTa < 1:20329857/68‑1 (MQ=255) gtgtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTa < 1:31216598/68‑1 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaa > 1:2251400/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa > 1:2904455/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATCTCGCTCTTAAAg > 1:2466903/1‑68 (MQ=14) aGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAg > 1:19213823/1‑68 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAg > 1:19834596/1‑67 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGc > 1:20041082/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGc > 1:1265424/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGc > 1:18212060/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGc > 1:17688261/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGc > 1:7245436/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAggag > 1:14205977/1‑66 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:29577718/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:9177417/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:19018882/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:12916944/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:16630615/1‑68 (MQ=255) gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCa < 1:30991502/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCctacacgttcaatgcaatctat < 1:14862618‑M2/41‑23 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:1124984/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt > 1:3976333/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:12186127/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt > 1:832618/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:10204427/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:17940366/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:15290652/68‑1 (MQ=255) aGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtttt < 1:21128141/68‑1 (MQ=255) aGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTATAAGGGGTCAtttt > 1:2483682/1‑68 (MQ=14) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat < 1:6007953/68‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:23884088/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat < 1:26902358/68‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:24249935/1‑68 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGTTGTAAAAGGCGTCATTTTCatat < 1:29827371/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:16465775/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:8954407/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:7381044/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:11126129/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:17649978/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:28038786/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:1502687/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:25563261/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:4943157/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:21883076/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:1403470/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:24441663/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCGGTAAAAGGCGTCATTTTCatat < 1:8741732/68‑1 (MQ=255) aGCGCATCAGGCAATGTGGCGTTTGTCCTCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:20923247/68‑1 (MQ=255) gcATCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttc < 1:10030856‑M2/67‑59 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATAtt < 1:16982804/66‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt < 1:30433944/68‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt > 1:16261239/1‑68 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGGCATTTTGATATTGt > 1:15833517/1‑68 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTAATATTGt > 1:11498385/1‑68 (MQ=255) aTCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTa < 1:27380527/67‑1 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:5157004‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:20624538‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:2609742‑M2/67‑62 (MQ=255) cAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgcc < 1:23714554‑M2/68‑64 (MQ=255) cAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgcc < 1:8136788‑M2/68‑64 (MQ=255) cgcctccacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgc > 1:21608393‑M2/2‑3 (MQ=255) gCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAc > 1:11774346/1‑68 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:9755418‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:10756932‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:4206027‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:14413247‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:2869854‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca > 1:7673885‑M2/1‑1 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:23276953‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:5624611‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:22861402‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:31732474‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:6757306‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:17441487‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgacggataatgcgttcacgccgcat < 1:6366486‑M2/68‑68 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:25235655/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:13461281/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:30129539/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:3399716/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACa < 1:4520951/65‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAc < 1:7916057/67‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACg > 1:363001/1‑68 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACg > 1:10565632/1‑68 (MQ=255) | ATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACG > CP009273/1546358‑1546491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |