New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1871532284 (0.740)19 (0.060) 6/96 NT 7.4% intergenic (+19/+3) yeaO/yoaF DUF488 family protein/DUF333 family outer membrane lipoprotein
?CP009273 = 1871547 233 (0.710)coding (243/255 nt) yoaF DUF333 family outer membrane lipoprotein

Only 100 of 323 total aligned reads displayed.

GCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATT  >  CP009273/1871480‑1871612
                                                                   |                                                                 
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:19719412/1‑68 (MQ=255)
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:18432156/1‑68 (MQ=255)
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:1633286/1‑68 (MQ=255)
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:27562469/1‑68 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgc                                                                 >  1:4365444‑M2/1‑66 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAg                                                                  >  1:31176685‑M2/1‑66 (MQ=255)
   ggTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgcc                                                                <  1:20536775‑M2/68‑4 (MQ=255)
     tGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgg                                                              <  1:14463073‑M2/68‑6 (MQ=255)
     tGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccg                                                               >  1:3678133‑M2/1‑63 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             >  1:10062569‑M2/1‑62 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             <  1:22990337‑M2/68‑7 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             <  1:15209202‑M2/68‑7 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             >  1:6259619‑M2/1‑62 (MQ=255)
        tGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggat                                                            >  1:16699743‑M2/1‑60 (MQ=255)
         ggCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          <  1:9534647/68‑1 (MQ=255)
          gCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          >  1:22625908/1‑67 (MQ=255)
           ccGCCTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:15398023/1‑68 (MQ=255)
           ccGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:14108429/1‑68 (MQ=255)
           ccGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:25038531/1‑68 (MQ=255)
           ccGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:19511207/1‑68 (MQ=255)
               cTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:751159/67‑1 (MQ=255)
               cTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGCTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:21658919/67‑1 (MQ=255)
                tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgcc                                                   <  1:18561023/68‑1 (MQ=255)
                tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgcc                                                   >  1:11187700/1‑68 (MQ=255)
                tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgcc                                                   >  1:24589001/1‑68 (MQ=255)
                  gCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGACGGTCAcg                                                     <  1:18179290/64‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:2632888/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:832097/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:25903109/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:17061390/68‑1 (MQ=255)
                     aCGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCcac                                              <  1:28521768/68‑1 (MQ=255)
                     aCGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCcac                                              <  1:25440471/68‑1 (MQ=255)
                     aCGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCcac                                              <  1:5832181/68‑1 (MQ=255)
                       gTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACaa                                            <  1:26549726/68‑1 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:13713670/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:3022580/1‑68 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCCCCACCCGGATGGACACGCCGCCACAAt                                           >  1:21278926/1‑67 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACaaa                                           >  1:5588883/1‑66 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           <  1:24223056/67‑1 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:31256208/1‑67 (MQ=255)
                         aGCTGGTGATTTAAGTACAGCATCCGCCGGTTATTTTTCCCCAgccggatgctgtactaaaatcacaa                                          >  1:31689161‑M2/1‑43 (MQ=255)
                         aGCTAGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:17699215/1‑67 (MQ=255)
                          gCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          >  1:24866845/1‑67 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagct                                       >  1:19237507‑M2/1‑40 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagct                                       >  1:1293470‑M2/1‑40 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGccc                                       >  1:30661975/1‑68 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGc                                         <  1:9583288/66‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGc                                         <  1:10819274/66‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGc                                         <  1:10655452/66‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTGCACCAGCCGGATGGGCACGCCGCCACAATcccg                                       >  1:22035598/1‑67 (MQ=255)
                            ttGTGATTTTAGTACAGAATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGccc                                       <  1:28977227/68‑1 (MQ=255)
                            ttGTGATATAAGACCAGCATCCGCCGGTTAATTTTCACCAgccggatgctgtactaaaatcacaagc                                        >  1:8556047‑M2/1‑40 (MQ=255)
                            ttGGGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGccc                                       <  1:2645781/68‑1 (MQ=255)
                            gtgcgaTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAcccggatgctgtactaaaatcacaagct                                       >  1:13433117‑M2/2‑40 (MQ=255)
                             tgtgATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCa                                      >  1:26699534/1‑68 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:8812536/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:3445758/67‑1 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:13254972/1‑68 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:29257108/1‑68 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  <  1:10377326/67‑1 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  <  1:12464193/67‑1 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:24063748/1‑67 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  <  1:4748272/67‑1 (MQ=255)
                                       gTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATc                            >  1:11499265/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:7812661/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:5167667/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:14661439/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:14951887/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:15660369/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:15937306/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:20662646/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:20925202/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:21572041/1‑68 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:7354107/1‑67 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:27260864/1‑67 (MQ=255)
                                              aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         <  1:5293579/64‑1 (MQ=255)
                                              aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCa                      >  1:32069925/1‑67 (MQ=255)
                                              aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCa                      >  1:22392326/1‑67 (MQ=255)
                                              aTCCGGCGGTATTTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCa                      >  1:11904107/1‑67 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCTCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:30564029/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:23645615/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:11054659/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:8928403/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:25230855/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGGCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:28721972/68‑1 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGGCCATTCATCAATCGTTTCACCGcca                >  1:13206375/1‑67 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:3772761/1‑68 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:5933650/1‑68 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAGGCCCATTCATCAATCGTTTCACCGccc                >  1:20216521/1‑68 (MQ=255)
                                                     ggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCgg              >  1:17360958/1‑68 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:13828945/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:29950037/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:7049188/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:20025073/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:9343205/67‑1 (MQ=255)
                                                           ttttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAttt        <  1:25281319/68‑1 (MQ=255)
                                                           ttttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAttt        <  1:27039198/68‑1 (MQ=255)
                                                               cACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCaa    <  1:1258474/68‑1 (MQ=255)
                                                                aCCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAt   >  1:10912835/1‑68 (MQ=255)
                                                                 ccAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAtt  <  1:27814080/68‑1 (MQ=255)
                                                                   |                                                                 
GCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATT  >  CP009273/1871480‑1871612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.