| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2787501 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
Only 100 of 543 total aligned reads displayed.
ATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATGGGG > CP009273/2787485‑2787617 | aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:6884733/1‑67 (MQ=255) tCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGac > 1:27749258‑M2/1‑66 (MQ=255) tCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGa < 1:26967708‑M2/67‑2 (MQ=255) tGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccgg > 1:31890243‑M2/1‑62 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:10641448‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:31673739‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc > 1:22954652‑M2/1‑61 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:13527702‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:7932080‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:25057270‑M2/68‑8 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:27398684/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:28846495/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:18063367/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:14469859/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCgg < 1:23921648/67‑1 (MQ=255) cGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:4216896/67‑1 (MQ=255) cGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:8558441/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:17149512/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:30538027/67‑1 (MQ=255) gCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg > 1:18678064/1‑68 (MQ=255) cGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCggg > 1:2036366/1‑68 (MQ=255) cGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCggg > 1:5826465/1‑68 (MQ=255) cGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCggg > 1:13057071/1‑68 (MQ=255) aGCCGCTCTCCGGCAAAAAGAATCAATAACACTTATACGCGTGACCCGGCGCGGGAAATGTCGGGgc < 1:16588682/67‑1 (MQ=255) aGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgc < 1:6439830/67‑1 (MQ=255) aGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGAGGGAAATGTCgggtc < 1:28584753/67‑3 (MQ=255) gCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgc > 1:15785610/1‑66 (MQ=255) cGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctc < 1:21182493/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:16332393/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:17606758/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:235310/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:18399127/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:25243506/68‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggccaacatagatttcttcctgttcac > 1:4632713‑M2/1‑37 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCtctc < 1:30064889/67‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCtctc < 1:20877830/67‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:26573696/68‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:28320656/68‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:20135889/68‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:12072049/68‑1 (MQ=255) ctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTccc < 1:2971812/68‑1 (MQ=255) ccGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCaa < 1:17307366/68‑1 (MQ=255) ccGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCaa < 1:7622840/68‑1 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGTGAAATGTCGGGGCGCTCTCCCAAGt < 1:14914153/68‑1 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt < 1:3957555/68‑1 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt < 1:19302027/68‑1 (MQ=255) aaaaaGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac < 1:3258964/68‑1 (MQ=255) aaaaaGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac < 1:1902256/68‑1 (MQ=255) aaaaaGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac < 1:5462804/68‑1 (MQ=255) aGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGacacac < 1:11813202/68‑1 (MQ=255) aGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGacacac < 1:10926076/68‑1 (MQ=255) aGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGacacac < 1:19735510/68‑1 (MQ=255) aGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGacac > 1:29064829/1‑66 (MQ=255) gAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACt > 1:8222284/1‑68 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACttt < 1:22044332/68‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACttt < 1:27965315/68‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACt < 1:2259739/66‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACt < 1:9461888/66‑1 (MQ=255) tCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTc > 1:30344133/1‑68 (MQ=255) aTAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCgag < 1:32041036/68‑1 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg < 1:9182405/68‑1 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg > 1:899202/1‑68 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg < 1:6027676/68‑1 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg > 1:24652913/1‑68 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg < 1:15105828/68‑1 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg > 1:19471333/1‑68 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:5119121/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCCCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:21633774/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:9813532/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt > 1:16049061/1‑68 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:18807444/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:20516397/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt > 1:21416853/1‑68 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:13746369/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt > 1:29842645/1‑68 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt > 1:29333174/1‑68 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACCTTCGAGAGGAt < 1:10098077/68‑1 (MQ=255) aTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt > 1:20759221/1‑67 (MQ=255) ttATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt < 1:6270481/47‑1 (MQ=255) ataCGCCTGacccgcccaacatagatttctccctgctcacgtaaagattgtcggatgcggcgtaaacg > 1:7127488‑M2/1‑9 (MQ=255) taCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAgg > 1:14707427/1‑68 (MQ=255) taCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAgg < 1:1146046/68‑1 (MQ=255) taCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAgg < 1:17748919/68‑1 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:13970776/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:18174240/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:25422985/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:16966285/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:3457989/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:24931653/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:835525/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:12574872/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:31013463/1‑68 (MQ=255) gcgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATg > 1:18547787/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:14144133/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:31160952/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:25777987/1‑68 (MQ=255) gTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATggg < 1:24381183/68‑1 (MQ=255) gTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg < 1:15366331/67‑1 (MQ=255) gTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg < 1:26203917/67‑1 (MQ=255) gACCCGGCGCGGGAAATGGCGGGGCGCTCTCCCAAGTGCCACACTTTCTAGAGGATTCAGGATgggg < 1:28075672/67‑1 (MQ=255) | ATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATGGGG > CP009273/2787485‑2787617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |