New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4047497290 (0.750)23 (0.070) 9/94 NT 8.3% coding (1142/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein
?CP009273 = 4047517 266 (0.820)coding (1122/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

Only 100 of 418 total aligned reads displayed.

GCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047453‑4047584
                                                                |                                                                   
 cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc                                                                  <  1:17095104‑M2/67‑4 (MQ=255)
 cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc                                                                  <  1:31639520‑M2/67‑4 (MQ=255)
  gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                >  1:24453983‑M2/1‑63 (MQ=255)
  gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                <  1:1186317‑M2/68‑6 (MQ=255)
  gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                <  1:9215860‑M2/68‑6 (MQ=255)
      tACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:28427536‑M2/68‑10 (MQ=255)
      aaacacctgccgctggctaacggtgatggcCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcg                                                            <  1:1076675‑M1/38‑1 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcga                                                           >  1:27135196‑M2/1‑58 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:11248457‑M2/67‑10 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:18111729/68‑1 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:8325970/68‑1 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACACTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:12352739/68‑1 (MQ=255)
        ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc                                                          <  1:21268805/68‑1 (MQ=255)
         tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:18614532/1‑68 (MQ=255)
         tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:3915749/1‑68 (MQ=255)
         tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:14738671/1‑68 (MQ=255)
         tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:24369560/1‑68 (MQ=255)
          ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact                                                        >  1:20937201‑M2/1‑55 (MQ=255)
          ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        >  1:30540191/1‑68 (MQ=255)
          ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        <  1:30296295/68‑1 (MQ=255)
          ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        <  1:5849525/68‑1 (MQ=255)
           tcCGCAACCGTTGATTCAACCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactg                                                       >  1:10988675‑M2/1‑54 (MQ=255)
           tcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactg                                                       >  1:16467869‑M2/1‑54 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt                                                      >  1:19128545‑M2/1‑53 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:25143304/1‑68 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:24872472/1‑68 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:22471971/1‑68 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:29595481/1‑68 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:14395446/1‑68 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:108854/1‑68 (MQ=255)
             cGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     <  1:6207161/68‑1 (MQ=255)
              gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:17277955/1‑67 (MQ=255)
              gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:1891380/1‑67 (MQ=255)
              gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:4520423/1‑67 (MQ=255)
              gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:4914633/1‑67 (MQ=255)
                aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:15694689/67‑1 (MQ=255)
                aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:19656747/67‑1 (MQ=255)
                aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:26224306/67‑1 (MQ=255)
                aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:14032876/67‑1 (MQ=255)
                aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:8744648/67‑1 (MQ=255)
                aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:10063793/67‑1 (MQ=255)
                 aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:7567371/1‑68 (MQ=255)
                 aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:10520257/1‑68 (MQ=255)
                 aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:2145267/1‑68 (MQ=255)
                 aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:13152624/1‑68 (MQ=255)
                 aCCGTTGATTCAAACAGTTCGCCGGCCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaa                                                 >  1:8568104‑M2/1‑48 (MQ=255)
                   cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                                               >  1:28594541/1‑68 (MQ=255)
                   cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                                               >  1:22056740/1‑68 (MQ=255)
                    gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAg                                              <  1:28357657/68‑1 (MQ=255)
                    gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAg                                              <  1:31091963/68‑1 (MQ=255)
                       gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg                                           >  1:29485238‑M2/1‑42 (MQ=255)
                          tCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCg                                        >  1:4016414/1‑68 (MQ=255)
                           ggtgatggcCGCCGGGCAAATCCGGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGTCAGCg                                        <  1:29960461‑M1/58‑1 (MQ=255)
                              aCAGTTCGCCGGGTAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:5531946/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCACCACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:3393236/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:6447134/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:7184877/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:16008839/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:16775737/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:9620438/1‑68 (MQ=255)
                                   tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt                                <  1:29833147/67‑1 (MQ=255)
                                   tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt                                <  1:9785498/67‑1 (MQ=255)
                                   tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:23487055/65‑1 (MQ=255)
                                    CGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGttt                              >  1:5188022‑M1/1‑68 (MQ=255)
                                            AAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCt                       >  1:9398411‑M1/1‑67 (MQ=255)
                                            AAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCt                       >  1:23846896‑M1/1‑67 (MQ=255)
                                            AAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTg                      <  1:17377201‑M1/68‑1 (MQ=255)
                                             aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:14191925/68‑1 (MQ=255)
                                             aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:4707500/68‑1 (MQ=255)
                                             aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:20046906/68‑1 (MQ=255)
                                             aaTCCTGAATCAACACTTCCTCCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:21616018/68‑1 (MQ=255)
                                                ccTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGgcgc                  >  1:13667216/1‑68 (MQ=255)
                                                 cTGAATCAACACTTCCTGCCTGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:6822299/68‑1 (MQ=255)
                                                 cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:17549304/68‑1 (MQ=255)
                                                 cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:13257765/68‑1 (MQ=255)
                                                 cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:15391257/68‑1 (MQ=255)
                                                     aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:2626682/68‑1 (MQ=255)
                                                     aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:25713544/68‑1 (MQ=255)
                                                     aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:28940260/68‑1 (MQ=255)
                                                      tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:15866039/1‑67 (MQ=255)
                                                      tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:26745121/1‑67 (MQ=255)
                                                      tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:20375903/1‑67 (MQ=255)
                                                      tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:20666980/68‑1 (MQ=255)
                                                      tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:22883338/68‑1 (MQ=255)
                                                       ccacacTTCCTGCCCGGCGGCCATCACCGTTAGCCCGCGGCAGGTGTTTTCCAGCTGGCGCACGGTGc           <  1:24563212/66‑1 (MQ=255)
                                                       cAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGc           <  1:27504605/68‑1 (MQ=255)
                                                       cAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGc           <  1:25564537/68‑1 (MQ=255)
                                                        aaCACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCAGGTTg            <  1:7723764/66‑1 (MQ=255)
                                                          cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:15292520/1‑68 (MQ=255)
                                                          cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:31888835/1‑68 (MQ=255)
                                                          cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:277663/1‑68 (MQ=255)
                                                          cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:11982052/1‑68 (MQ=255)
                                                           acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg       <  1:12261059/68‑1 (MQ=255)
                                                           acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:4329369/1‑67 (MQ=255)
                                                           acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:28000007/1‑67 (MQ=255)
                                                           acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:19450193/1‑67 (MQ=255)
                                                           acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:29241663/1‑67 (MQ=255)
                                                                cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:26460764/68‑1 (MQ=255)
                                                                cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:7918268/68‑1 (MQ=255)
                                                                cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:2233487/68‑1 (MQ=255)
                                                                |                                                                   
GCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047453‑4047584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.