| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 439 (1.140) | 55 (0.180) | 14/90 | NT | 14.1% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 320 (1.030) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 633 total aligned reads displayed.
CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 | ctgcatacacgcaccgatagccactttttttcgccccccaaatgtagaccagacggggggcgaaaaaa < 1:14032013‑M2/3‑1 (MQ=255) atacacgcaccgatagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGt < 1:279999‑M2/6‑1 (MQ=255) atacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTg < 1:13666439‑M1/44‑1 (MQ=255) tacacgcaccgatagccactttttttccccccccaaatgtagaccacacggggggggaaaAAAAGTgg < 1:20288121‑M2/8‑1 (MQ=255) cccgcaccgatacccactttttttcgccccccaactgtagaccagacggggggcgaaaAAAAGTGGCt < 1:29925243‑M2/10‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:70000‑M1/48‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:26163407‑M1/48‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:14585634‑M1/48‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGGTATCgg < 1:2217327‑M1/52‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:22341725/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:27695663/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:8787424/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:31222064/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:24161922/68‑1 (MQ=255) aCCTGGAGTCATCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:15273044/68‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:20709352/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:21028620/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:26331782/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAGTTGGGGGGCGAAAAAAAGTGGCTATCGGGGc > 1:15014536/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCGGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:15699780/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCG‑CCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg > 1:30621396/1‑68 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:31482662/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:25543582/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:11810170/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:13504102/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:28241903/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:9055274/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:18351928/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:22766359/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:1556887/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:3487420/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:1316335/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGGGCg < 1:4059094/68‑1 (MQ=255) tagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCg < 1:19111137‑M2/19‑1 (MQ=255) tagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCg < 1:32076179‑M2/19‑1 (MQ=255) tagccactttttttcgccccccaaatgtacaccagacggggggcgaaaAAAAGTGGCTATCGGTGCg < 1:24396116‑M2/19‑1 (MQ=255) tagccaccttttttccccccccaaatgtcgcccacacggggggcgaaaAAAAGTGGCTATCGGTGCg < 1:7663192‑M2/19‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt < 1:18068653/68‑1 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:12444619/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:5419128/1‑68 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:23287287/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:10004366/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:11288742/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:30182118/67‑1 (MQ=255) ccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTa < 1:23617845‑M1/60‑1 (MQ=255) cactttttttcgccccccaaatgtagcccagccggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:3813600‑M2/24‑1 (MQ=255) cactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCgtgt < 1:31039113‑M2/22‑1 (MQ=255) cactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:22963915‑M2/24‑1 (MQ=255) cacttttttccgccccccaaaagtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCgtgt < 1:10785705‑M2/22‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:27124528/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:2149703/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:9273737/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:7154945/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:31863723/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:21242745/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:4876398/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:23753553/67‑1 (MQ=255) cccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg > 1:4488556/1‑68 (MQ=255) cTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga > 1:19484406/1‑68 (MQ=255) TTCGCCCCCCGTCTGGTCTTCATTTGGGGGGGGAAAAAAAGTGGCTATCGGTGCGTGTATtcaggtga < 1:16742028‑M1/68‑4 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga < 1:30369606‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga < 1:26791294‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga < 1:17600729‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga > 1:13413991‑M1/1‑68 (MQ=255) cgccccccaactgaagaccagccggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt < 1:2521287‑M2/34‑1 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:9567582‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:29338013‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:26947446‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:19164107‑M1/1‑68 (MQ=255) GCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt < 1:5711176‑M1/67‑1 (MQ=255) GCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt < 1:12129420‑M1/67‑1 (MQ=255) GCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTg > 1:24068413‑M1/1‑68 (MQ=255) CCCGCGTCTGGTGTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt > 1:17162928‑M1/1‑68 (MQ=255) CCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:7735078‑M1/1‑68 (MQ=255) CCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:188643‑M1/1‑68 (MQ=255) tCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg > 1:8200038/1‑68 (MQ=255) acTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGACAGCTATTCTg > 1:29570684/2‑68 (MQ=255) tGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGc > 1:18561938/1‑68 (MQ=255) tCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAtt > 1:8555975/1‑68 (MQ=255) cTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAtt < 1:12795317/67‑1 (MQ=255) aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:21756490/1‑67 (MQ=255) aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:20154269/1‑67 (MQ=255) aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:7490736/1‑67 (MQ=255) aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:28849774/1‑67 (MQ=255) tttGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:16328214/1‑68 (MQ=255) ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCa < 1:14758162‑M2/57‑1 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:25646481‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:28563891‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:11592218‑M2/11‑66 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 1:617324‑M2/10‑67 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 1:14386804‑M2/10‑67 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc < 1:2054152‑M2/58‑1 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 1:10489331‑M2/10‑67 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGGGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 1:24883005‑M2/10‑67 (MQ=255) ggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTc < 1:625612‑M2/60‑1 (MQ=255) cgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGa < 1:675890‑M2/62‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:16113834‑M2/63‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:3708698‑M2/63‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:13924571‑M2/63‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:28339768‑M2/63‑1 (MQ=255) | CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |