| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4243928 | NA (NA) | 5 (0.010) | 4/98 | NT | NA | noncoding (100/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | = 4243958 | NA (NA) | noncoding (130/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
Only 100 of 578 total aligned reads displayed.
AACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAA > CP009273/4243891‑4244023 | aacacaTCGCAATTTATTGAATTTGCAGATT‑TGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCa > 1:12299780/1‑68 (MQ=255) acccaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCa > 1:32022081/4‑68 (MQ=255) acacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCa > 1:2371105/1‑68 (MQ=255) acacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCa > 1:30118746/1‑68 (MQ=255) acacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCa > 1:5642795/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:15310607/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:31420008/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:16753348/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:26971669/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:26202879/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:22949304/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:666523/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:20104128/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:5762629/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:11534777/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:20618333/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt > 1:10376625/1‑68 (MQ=255) acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGACGCAGCCGGCAAt > 1:6981929/1‑68 (MQ=255) aTCCCAATTTATTGAATTTGCAGATTTTGGAAGGCCGGATAAGGCGTTTTCGCCGCTTCCGGCAATtc < 1:21906935/68‑1 (MQ=17) tCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATtc > 1:15575462/1‑67 (MQ=255) tCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATtc > 1:21731151/1‑67 (MQ=255) gCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATtctc > 1:739535/1‑67 (MQ=255) gCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATtctc > 1:26682685/1‑67 (MQ=255) gCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATtctc > 1:31636142/1‑67 (MQ=255) aaTTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATtctctc < 1:24952694/67‑1 (MQ=255) aaTTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTctctct < 1:4757069/68‑1 (MQ=255) atttatttAATTTGCAGATTATGGAAGGCCGGATACGGCGTTTTCGCCGCATCCGGCAATTCTCTCTg < 1:9431069/68‑1 (MQ=255) aTTTATTGATTTTGCAGATTAGGTCAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTg < 1:18922170/68‑1 (MQ=18) aTTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTg > 1:75116/1‑68 (MQ=255) aTTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTg > 1:28958941/1‑68 (MQ=255) ttATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGAt > 1:10815922/1‑68 (MQ=255) ttATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGAt > 1:12578941/1‑68 (MQ=255) ttGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTa > 1:18067119/1‑67 (MQ=255) ttGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTa > 1:4237682/1‑67 (MQ=255) tGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAcc < 1:13324723/68‑1 (MQ=255) gAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAccc < 1:1355160/68‑1 (MQ=255) aTTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCt > 1:9213333/1‑67 (MQ=255) tttGCAGATAATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTc < 1:25269879/68‑1 (MQ=255) tGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGc < 1:7774539/68‑1 (MQ=255) cAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGc > 1:8347662/1‑66 (MQ=255) aTTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGc > 1:14171664/1‑68 (MQ=255) ttATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCt < 1:30668953/65‑1 (MQ=255) ttATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGc < 1:29935515/67‑1 (MQ=255) tATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGt < 1:5233713/68‑1 (MQ=255) tATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGt < 1:29633460/68‑1 (MQ=255) ggAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc < 1:7126428/68‑1 (MQ=255) ggAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc > 1:13009127/1‑68 (MQ=255) gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc > 1:454468/1‑67 (MQ=255) gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc > 1:20224536/1‑67 (MQ=255) gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc > 1:24499738/1‑67 (MQ=255) gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc > 1:10066997/1‑67 (MQ=255) gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc > 1:22112464/1‑67 (MQ=255) gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc > 1:18266572/1‑67 (MQ=255) gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc > 1:1187948/1‑67 (MQ=255) gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc > 1:16045224/1‑67 (MQ=255) aGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCAct < 1:10709150/68‑1 (MQ=255) aGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCAc > 1:22305178/1‑67 (MQ=255) aGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCAc > 1:3304409/1‑67 (MQ=255) aGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCAc > 1:24178868/1‑67 (MQ=255) gCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCActc > 1:17784889/1‑67 (MQ=255) gCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCActc > 1:27260490/1‑67 (MQ=255) ccGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCActc < 1:1637686/66‑1 (MQ=255) cGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCa < 1:12801723/68‑1 (MQ=255) cGGATAAGGCGTTTTCGCCGAATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc < 1:3822884/67‑1 (MQ=255) cGGATAAGCCGTTTTCGCCGCATCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgt > 1:28441704‑M2/1‑28 (MQ=255) aTAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAAt < 1:27594950/67‑1 (MQ=255) acggcgTTTTCCCCGCACCCGGCctcccataatctgcaaattcaataaattgcgatgtgttgtgtagg > 1:8011365‑M2/3‑23 (MQ=255) aaGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCg > 1:14718092/1‑67 (MQ=255) aGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTc > 1:31169697/1‑68 (MQ=255) cGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCaa > 1:17574277/1‑67 (MQ=255) cGTTTTCGCCGCATCCGGCAATTCGCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCaa > 1:23054498/1‑67 (MQ=255) ggccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:9594699/67‑1 (MQ=255) ggccgaATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:11227833/67‑1 (MQ=255) cgcggcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:16621564/68‑1 (MQ=255) cgccgcATCCGGCAATTCTCTCTGGTTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:10228390/68‑1 (MQ=255) cgccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:30986784/68‑1 (MQ=255) cgccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:21397682/68‑1 (MQ=255) cgccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:2336396/68‑1 (MQ=255) cgccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:26355750/68‑1 (MQ=255) cgccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:28128601/68‑1 (MQ=255) cgccgaATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg < 1:2881262/68‑1 (MQ=255) gccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg > 1:22657218/1‑67 (MQ=255) gccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGt < 1:30407455/68‑1 (MQ=255) cgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCt < 1:20388544/68‑1 (MQ=255) aTCGGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGa < 1:18625443/67‑1 (MQ=255) aTCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGa < 1:25844121/67‑1 (MQ=255) aTCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGa < 1:29443574/67‑1 (MQ=255) aTCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGa < 1:19372995/67‑1 (MQ=255) aTCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGa < 1:6553651/67‑1 (MQ=255) aTCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGAt < 1:17159951/68‑1 (MQ=255) aTCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGAt < 1:8536239/68‑1 (MQ=255) aTCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGAt < 1:25735725/68‑1 (MQ=255) tCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgc < 1:6193420‑M2/68‑63 (MQ=255) tCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgc < 1:14041236‑M2/68‑63 (MQ=255) ccGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgca > 1:14476994‑M2/1‑5 (MQ=255) ccGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgca > 1:13793174‑M2/1‑5 (MQ=255) ccGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgca > 1:30881953‑M2/1‑5 (MQ=255) ccGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGt < 1:19748382/68‑1 (MQ=255) ccGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGt < 1:18837195/68‑1 (MQ=255) ccGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGt < 1:25513037/68‑1 (MQ=255) | AACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAA > CP009273/4243891‑4244023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |