| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,295 | T→A | 11.3% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,295 | 0 | T | A | 11.3% | 879.2 / 61.5 | 322 | V707E (GTA→GAA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (154/130); new base A (30/8); total (184/138) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.72e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 335 total aligned reads displayed.
GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC > CP009273/1703228‑1703359 | gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGt > 1:15873791/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGt > 1:10730464/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGt > 1:32039368/1‑68 (MQ=255)ccTGCCGTTGAAGCCGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGt < 1:15515840/67‑1 (MQ=14) tGCCGTCGAAGCGGCTATTGCACGCGCCTAAGCTCGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTAc < 1:232215/68‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTa < 1:3524993/67‑1 (MQ=255) cgCCGTCTATGGGGCTATTTCACGTGTCAAAG‑ACACATAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:12445019/66‑1 (MQ=9) gCCGTCGAAGCGGCTATTGCACGGGCCAAAGCACGCA‑AGCT‑GAACAGCAACAGGCTAATGCGGTACCa < 1:2279729/68‑1 (MQ=17) cGTTGAAGCAGCTATTGCACGCGCCAAAGCCCGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:13380272/67‑1 (MQ=11) cGTCGAAGCTGCTATTGCCCGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:11626867/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:837775/67‑1 (MQ=255) cGTCGAAGCAGCTATTGCCCGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:4304388/67‑1 (MQ=255) gttgAAGCCGCTATTGCACGCGCCAAAGCTCGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCaga < 1:14980857/65‑1 (MQ=14) gtggAAGCGGCTATTGCACGCGCCAAAGCTCGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCaga < 1:14036918/65‑1 (MQ=255) tCGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTTCCagaa > 1:23896097/1‑68 (MQ=255) tCGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCagaa > 1:14257086/1‑68 (MQ=255) cGAAGCTGCTATTGGACGCGCCTAATCTCTCA‑AGGTGTAACAGGAAATGGCTAATGCGGTACCagaag < 1:3160925/68‑1 (MQ=9) cGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCagaa < 1:28386486/67‑1 (MQ=255) gAAGCTGCTATAGCCCGCGCCAAAGCTCGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:10871616/68‑1 (MQ=11) gAAGCGGCTATTGCACGCGCCAAAGCTCGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:25104324/68‑1 (MQ=255) gAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:1139259/68‑1 (MQ=255) ctgCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:4021114/66‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCTCGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:14554526/66‑1 (MQ=255) tgCTATCGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:21099180/66‑1 (MQ=255) ggCTATTGCCCGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:3218073/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:21202509/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:22194070/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:26859329/67‑1 (MQ=255) cTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGtt > 1:4449301/1‑68 (MQ=255) tGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:7700198/1‑67 (MQ=255) tGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:2169838/1‑67 (MQ=255) cgCACGCGCCAAAGCTCGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATc < 1:27638400/67‑1 (MQ=255) cACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:2715893/1‑67 (MQ=255) cACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:28821342/1‑67 (MQ=255) cACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:25921907/1‑67 (MQ=255) aCGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc < 1:1822068/68‑1 (MQ=255) aCGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:20235029/1‑68 (MQ=255) aCGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc < 1:23667246/68‑1 (MQ=255) aCGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:22049922/1‑68 (MQ=255) gcgcCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGATCACGTTGATCcgcga > 1:30298737/1‑67 (MQ=14) ccAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa > 1:30872620/1‑68 (MQ=255) gCACGCA‑AGCTGGAACATCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:1894988/1‑68 (MQ=255) gCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:15698502/1‑68 (MQ=255) gCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:8944845/1‑68 (MQ=255) gCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:1001981/1‑68 (MQ=255) cGCA‑AGCTGGAACAGCAACAGGCAAATGCGGTACCAGAAGAACAGGTGGATCCGCGCAAAGCGGCAGt < 1:17594606/68‑1 (MQ=14) gCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGtc > 1:6673622/1‑67 (MQ=11) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg > 1:21883140/1‑68 (MQ=255) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg > 1:5938205/1‑68 (MQ=255) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:30041224/68‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGACGACCAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:6942175/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:26216898/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:30525394/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:9164632/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:10947902/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:20897146/67‑1 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:4693224/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:6381539/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:17857801/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:16971857/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:2936347/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTTGCAGCGGCTa > 1:31328088/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCGGCTa > 1:24450926/1‑68 (MQ=14) aaCAGGCTAATGCGGTACCAGAATAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc < 1:24065053/67‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc > 1:24013069/1‑67 (MQ=255) aaCAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGCCGCGGCTATTGc > 1:23489781/1‑67 (MQ=14) aaCAGGCTAATGCGGAACCAGAAGAACAGGGTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:24723522/68‑1 (MQ=255) aaCAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCCGCTATTGc > 1:9505398/1‑67 (MQ=11) aaCAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGACGCGGCTATTGc > 1:24640193/1‑67 (MQ=11) aaCAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGCCGCGGCTATTGc > 1:5784075/1‑67 (MQ=11) gCTAATGCGGTACCTGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:21520466/1‑66 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:2248563/1‑66 (MQ=255) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTTGCAGCGGCTATTGCCCgcgc > 1:720206/1‑68 (MQ=14) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgcg < 1:5588619/66‑1 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc > 1:28044503/1‑67 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc > 1:16624861/1‑67 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc > 1:23343509/1‑67 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc > 1:11731324/1‑67 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc < 1:20024964/67‑1 (MQ=255) cTAATGCGGTACCAGAACAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc < 1:25477321/67‑1 (MQ=255) tGCGGTACCAGAAGAACAGGGTGATCCGCGCAAATCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:687330/68‑1 (MQ=255) tGCGGTACCAGAACAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:3182087/68‑1 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:8237022/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:1416132/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:7765071/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:7990141/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:19866255/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:11108920/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:10348634/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:19092159/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:19345813/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:6290891/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:613246/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:5099409/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:20439741/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:3801045/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:27878583/1‑67 (MQ=255) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGCAGCGGCTATTGCCCGCGcacacg > 1:29768155/1‑65 (MQ=14) gCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCGGCTATTGCCCGCGCACAGGc > 1:29559731/1‑68 (MQ=18) cGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCGGCTATTGCCCGCGCCAAGGcc > 1:13437112/1‑68 (MQ=17) | GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCA‑AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC > CP009273/1703228‑1703359 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |