| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,328 | A→C | 6.8% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,328 | 0 | A | C | 6.8% | 977.2 / 6.8 | 429 | intergenic (+367/+247) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (148/214); new base C (6/29); total (154/275) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.96e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 434 total aligned reads displayed.
TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGT > CP009273/3263261‑3263394 | tttGGGTATAGTGTCGTGGACAGTCATTCATATTTCAGCCCCTACAAAAGTAAAAACCCGCCGAAGCg > 1:13491427/1‑68 (MQ=11) ttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAACGTAAAAACCCGCCGAAGCgg < 1:24206631/68‑1 (MQ=25) ttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCgg < 1:30618417/68‑1 (MQ=35) ttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCgg < 1:25888979/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCggg < 1:23877167/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCggg < 1:23110524/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCggg < 1:21536485/68‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGtt < 1:7418539/67‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGTAAAAAACAGCCCAAGCGGGttt > 1:30083744/1‑68 (MQ=11) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGttttt > 1:598736/1‑68 (MQ=35) ataGTGTCGTGGACAGTCATTCATCTTTCTGAGAATCCAAAATTAAAAACCAGCCGAAGATGGgtttt > 1:29130626/1‑68 (MQ=2) agcgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:22335057/65‑1 (MQ=1) aGTGTCGTTGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:13332280/68‑1 (MQ=25) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:19192181/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:9196464/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:16001669/68‑1 (MQ=35) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACg > 1:16859640/1‑68 (MQ=35) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACg > 1:17737294/1‑68 (MQ=35) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCCAAGCGGGTTTTTACg > 1:10392535/1‑68 (MQ=25) gtgtCGTGGACAGTCATTCATCTTTCGGCCCCTCCAAAAGTTAAATCACGCCGAAGCGGGTTGTTACg > 1:20572038/1‑68 (MQ=11) gtCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGTAAAAACCCGCCGCAGCGGGTTGTTACGTa > 1:18946984/1‑68 (MQ=11) gtCGTGGACAGTCATTCATCTTTATGCCCCTACAAAAGTAAAAACCCGCCCAAGCGGGTTTTTACGTa > 1:6788426/1‑68 (MQ=11) gtCGTGGACAGTCATTCATCATTGAGCCCCTACAAAACTAAAAACCCCCCGAAGGGGGGTTTTACGTa > 1:8767465/1‑68 (MQ=11) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa > 1:653694/1‑68 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:16732968/68‑1 (MQ=35) cGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGTAAAAAACCGCCGAAGCGGGTTTTTGCGTaaa > 1:15215097/1‑68 (MQ=11) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACTTTAAACa > 1:7282651/1‑68 (MQ=255) taCAGTCATACATCTTTCTGCCCCTCCAAAAGTAAACACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:12924118/67‑1 (MQ=14) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:23285257/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:36035/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:26817177/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:25608900/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:14832349/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:22583228/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:3798151/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:21843846/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTaaaa > 1:3957179/1‑64 (MQ=14) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACatg > 1:27107126/1‑66 (MQ=255) aGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAACACAGGTg > 1:15817870/1‑68 (MQ=255) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg < 1:1549453/63‑1 (MQ=255) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGt < 1:5448176/64‑1 (MQ=40) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa < 1:28819752/67‑1 (MQ=40) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa < 1:19598497/67‑1 (MQ=40) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa < 1:5221358/66‑1 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTgcc > 1:20736559/1‑66 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:26378629/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:9727956/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:11788477/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:13230147/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:1641410/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:18381918/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:7072190/1‑67 (MQ=255) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc < 1:2468066/68‑1 (MQ=255) cTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCg > 1:31125361/1‑68 (MQ=255) ggcccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc < 1:15002851/66‑1 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:7695669/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:17292880/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc < 1:4142122/68‑1 (MQ=255) ccccTCCAAAAGTAAAGACCCGCCGAAGCGGGTTTTTACGTAAAACCTGTGTCTATGACCGATAAccc > 1:14730224/1‑68 (MQ=14) cccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGcc > 1:20966164/1‑67 (MQ=40) ccTCCAAAATTATAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGc < 1:19815990/68‑1 (MQ=14) ccTCCAAAATTAAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:2484173/68‑1 (MQ=255) acTCCAAAAGTTTAAACCCGCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:3329214/67‑1 (MQ=14) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:1080547/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:7985431/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:24357619/68‑1 (MQ=255) aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttcttt < 1:23447631/68‑1 (MQ=255) ttAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg < 1:27936064/67‑1 (MQ=37) tAAAAACCCGCCGCATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:30398675/68‑1 (MQ=255) caaaaaCCCGCCGTATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:11199395/67‑1 (MQ=11) ataaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:26608237/65‑1 (MQ=25) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg < 1:28201168/68‑1 (MQ=35) aaaaaCCCGCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:12716715/67‑1 (MQ=25) taaaCCCGCCGTATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:10057640/67‑1 (MQ=11) caaaCCCGCCGTAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:9419761/67‑1 (MQ=11) caaaCCCGCCGCACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:25359465/67‑1 (MQ=11) aaaaCCCGCCGTAGCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:8173927/68‑1 (MQ=255) aaaaCCCGCCGCATCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:8537264/68‑1 (MQ=11) aaaaCCCGCCGAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:12474863/68‑1 (MQ=255) aaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:4348502/68‑1 (MQ=35) aaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:27506601/68‑1 (MQ=35) aaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:13826465/68‑1 (MQ=35) aaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:31281283/68‑1 (MQ=35) aaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:6187492/68‑1 (MQ=25) cccGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttctt > 1:4705272/1‑58 (MQ=35) cccGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg > 1:1425314/1‑68 (MQ=35) cccGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGGGATAg > 1:19443094/1‑68 (MQ=255) ccgccgCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:8095180/68‑1 (MQ=255) ccgccgCACCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:29303945/68‑1 (MQ=11) ccgccgAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:31711361/68‑1 (MQ=255) ccgccgAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:5608002/68‑1 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:736107/68‑1 (MQ=37) gccgTATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:31902529/68‑1 (MQ=14) gccgTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:4624295/68‑1 (MQ=255) gccgTAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:23595539/68‑1 (MQ=255) gccgTACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:2114614/68‑1 (MQ=14) gccgCAGCGGGTTATTACGTACAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:20237241/68‑1 (MQ=11) gccgAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:25158835/68‑1 (MQ=255) gccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:28427696/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:1163315/68‑1 (MQ=40) | TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGT > CP009273/3263261‑3263394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |