| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,556 | G→C | 5.9% | intergenic (+595/+19) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,556 | 0 | G | C | 5.9% | 1096.5 / 8.0 | 407 | intergenic (+595/+19) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base G (202/157); new base C (3/24); total (206/201) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.57e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 413 total aligned reads displayed.
TTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCAT > CP009273/3263490‑3263622 | ttttGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGc < 1:3852784/68‑1 (MQ=35) tttGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGGCCCTCCAAAAGCAAAAACCCGCCGAAGCg > 1:19449065/1‑68 (MQ=255) gggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:9673075/68‑1 (MQ=35) gggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:13117911/68‑1 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:10425674/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:8277261/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:27378698/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt < 1:2614371/67‑1 (MQ=35) gTATAGCGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:9325045/1‑68 (MQ=25) ataGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt > 1:1788070/1‑68 (MQ=35) ataGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt > 1:14569663/1‑68 (MQ=35) ataGCGTCGTGGACAGTCATTCATCATTCTGCCCCTCCAAAAGCAAAAACCCGCCCAAGCGGGttttt > 1:17617948/1‑68 (MQ=11) aGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:8620676/68‑1 (MQ=35) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:4279349/1‑68 (MQ=33) gCGTCGTGGACAGTCATTAATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:26544061/1‑68 (MQ=255) cgtcgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt > 1:30039195/1‑68 (MQ=31) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCTGGTTATTACGTAAATCa > 1:4009208/1‑68 (MQ=255) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCa > 1:20161470/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:23459505/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:21865549/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:16710805/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:10553144/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:12725620/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:22349665/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:31402429/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:22071466/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:22858423/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:9187057/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:2458706/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:28455307/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:20771888/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:20459827/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:12886101/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:22600131/1‑68 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCAGCCGAAGCGGGGTTTTACGTAAATAAgg > 1:1654736/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGCCACTCCAAAAGAAAAAACCCGCCGAACCGGGTTTTTACGTAAATCAgg > 1:25724472/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGACCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:14486103/1‑68 (MQ=25) aGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTg > 1:10708836/1‑68 (MQ=25) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:5127536/1‑68 (MQ=35) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:4572592/1‑68 (MQ=35) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:2440927/1‑68 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGt < 1:14667612/64‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGt < 1:18294476/64‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:17282755/67‑1 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTg > 1:9050192/1‑68 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:27617756/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:29438750/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:10098377/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:23300427/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:1157026/1‑67 (MQ=35) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc > 1:5866307/1‑68 (MQ=35) tCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATa < 1:5451380/68‑1 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:30351905/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:7103932/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:8169924/68‑1 (MQ=35) gCCCCTCCAAAAGCAAAAAACCGCCGAAGCGGGTTTTTACGTAAATGAGGTGAAACTGACCGATAAg > 1:21610035/1‑67 (MQ=11) ccccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGcc > 1:12188675/1‑68 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:18775042/1‑68 (MQ=35) ccTCCAAAAGCACAAACCCGCCGAACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:3270368/68‑1 (MQ=255) ccTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:31737192/68‑1 (MQ=255) ccTCAAAAATCTAAAACCCGCCGTACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:23830739/68‑1 (MQ=11) acTCCAAAAGAAAAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:3727059/67‑1 (MQ=11) cTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCggg < 1:3541466/68‑1 (MQ=39) tCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:24315493/68‑1 (MQ=40) cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTc < 1:6624095/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCt < 1:10994428/68‑1 (MQ=255) aatcAAAAACCCGCCGCAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:2705528/65‑1 (MQ=17) aaGCATAAACCCGCCGTACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:11939162/68‑1 (MQ=17) aaGCACAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:30553744/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt > 1:13408470/1‑63 (MQ=40) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:2400511/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:11299460/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:14109998/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:14915190/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:19070798/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:12421849/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:31045748/68‑1 (MQ=255) aaGCAAAAACCCGCCGAACCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:28847047/68‑1 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:16356005/1‑68 (MQ=255) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGt < 1:28093357/67‑1 (MQ=255) aaaCCCGCCGTACCGGGTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGTGGa < 1:15509570/68‑1 (MQ=18) aCCCGCCGAAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:21192393/68‑1 (MQ=255) cccGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg > 1:24750937/1‑68 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:6268899/68‑1 (MQ=255) ccgccgAACCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:24984491/68‑1 (MQ=21) cgccgAAGCGTGTTTTTACGTAAAACCGGTTAAACTGACAGATAAGCCGTGTTCTGTCGTGGACAGtc < 1:7747869/68‑1 (MQ=17) cgccgAAGCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtc < 1:7523900/68‑1 (MQ=21) cgccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtc < 1:5621403/68‑1 (MQ=255) cgccgAACCGGTTTATTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtc < 1:15304648/68‑1 (MQ=21) cgccgAACCGGGTTATTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:22169819/67‑1 (MQ=255) gccgCAGCGGTTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtca < 1:13545782/68‑1 (MQ=21) gccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtca < 1:25572064/68‑1 (MQ=255) gccgAAGCGGGTTATTACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtca < 1:15040068/68‑1 (MQ=255) cgAAGCGTTTTTTTACGTAAATCCCGTGAACCAGACCGATAAGCCGGGTTCTGTCGTGGACAGtcatt < 1:31472238/68‑1 (MQ=25) gAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattc > 1:26771172/1‑68 (MQ=255) cgCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATACGCCGGGTTCTGTCGTGGACAGtcattcat < 1:25449683/67‑1 (MQ=255) aGCGTGTTTTTACGTAAATCTGGTCAAACTGACAGATAATCCGGGTTCTGTCGTGGACAGtcattca < 1:13824765/67‑1 (MQ=25) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattca < 1:17056436/67‑1 (MQ=255) gCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattca > 1:30692000/1‑66 (MQ=255) gCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattca > 1:15920505/1‑66 (MQ=255) | TTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCAT > CP009273/3263490‑3263622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |