| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4539678 = | 456 (0.960) | 4 (0.010) | 4/102 | NT | 0.95% | intergenic (+151/+92) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter |
| ? | CP009273 | 4539701 = | 416 (0.960) | intergenic (+174/+69) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 163 total aligned reads displayed.
ATGGCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4539749‑4539678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagggGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTC > CP009273/4539701‑4539766 ATGGCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAG > 1:1938998/1‑68 GGCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAG > 1:37078221/1‑68 GGCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAG > 1:26386331/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:4587114/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:35149882/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:34573335/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:38363834/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:15861632/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:445998/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:23024121/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:25874948/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:6865944/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:11341551/1‑68 GCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG > 1:23777433/1‑68 CAGGCTCAGACTGATTACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:29386776/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAtg < 1:17675929/67‑3 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:33586326/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:10400014/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:25460420/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:34794647/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:34615134/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:29404296/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:32668249/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:31328642/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:2857359/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:24704894/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:30794755/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:30316036/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:555842/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:9828032/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:9260062/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:842090/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:7506548/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:7219351/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:6524189/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:6387980/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:6074922/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:36388556/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:5435485/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:5031640/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:4086639/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:38893889/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:38564656/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:37681621/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:37129581/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:36572344/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:1419358/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:18870667/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:18547652/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:18104127/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:17010788/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:15924489/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:15673686/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:14945722/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:14439183/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:14259214/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:17202667/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:13015987/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:12800486/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:12745018/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:12307689/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:11931112/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:11779344/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:11476916/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:11145301/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:10301462/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:21259719/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:2077645/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:23151920/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:20048089/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:203083/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:23387949/67‑1 CAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:23639013/67‑1 AGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGGG < 1:20045591/67‑1 AGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGGG < 1:34173424/67‑1 AGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGGG < 1:35554265/67‑1 GCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGGG < 1:27782987/65‑1 ATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGG < 1:8471993/54‑1 GAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGT < 1:23825769/68‑1 GAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGT > 1:37342341/1‑68 GAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGT < 1:22628870/68‑1 GAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGG < 1:9120424/67‑1 GAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGG < 1:35033741/67‑1 GAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGG < 1:19003792/67‑1 GAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGG < 1:37929511/67‑1 GGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTG > 1:10931641/1‑67 GGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTG > 1:2367181/1‑67 GGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGT > 1:29075468/1‑67 GGAGTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTC < 1:34078058/67‑1 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTC < 1:23886283/67‑1 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTC < 1:15130867/67‑1 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGT > 1:28942446/1‑66 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGT > 1:17032782/1‑66 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGT < 1:23439882/66‑1 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGT < 1:37264878/66‑1 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGT > 1:24611629/1‑66 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGT < 1:8937184/66‑1 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGT > 1:20404244/1‑66 GGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGT < 1:4824/66‑1 GGACTGGCCGGGCACATTTTTAGACTTTGTCTTCAGTCTGAGCCTGGCATTGGCAGGCTGTGGTGT < 1:30448624/66‑1 ATGGCAGGCTCAGACTGATGACAAAGTCTAAAAATGTGCCCGGACAGTCCCCTCGCCCCTCCGGGGAGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4539749‑4539678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagggGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTC > CP009273/4539701‑4539766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |