| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 361 (0.760) | 576 (1.230) | 26/110 | NT | 57.2% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 506 (1.080) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 630 total aligned reads displayed.
GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/360029‑360096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG > CP009273/3508417‑3508483 cagTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAA > 1:29500754/4‑68 agTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAA > 1:36030181/3‑67 agTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAA > 1:16735648/3‑67 agTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAA > 1:14425459/3‑67 gTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAC > 1:39572574/2‑68 gTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAC > 1:21833359/2‑68 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGA < 1:33924685/68‑1 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:38200322/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:5942106/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:17138819/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:23134691/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:1386008/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:10503167/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:10912460/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:26146547/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:23952286/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:351788/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:5349961/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:37336771/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:33340691/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAA < 1:20407297/65‑1 GATAAGCTGTCAAACATGAGAATTCCATACTCTTCTCATTGAGTATTATTTTTTAGCGGGTGAAACG > 1:1566858/1‑67 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:31591493/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:26297286/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:39244843/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:2105222/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:6196380/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAC > 1:26709916/1‑67 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAC < 1:25789553/67‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAC > 1:28610822/1‑67 AAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:22874467/1‑67 AGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCC < 1:6551953/68‑1 AGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCC < 1:11583596/68‑1 AGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:18755993/1‑66 AGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:14916662/1‑66 GCTGTCAAACATGAGAATTCCATCCGCTTCTGCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:24547375/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:426571/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:2756127/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:29657257/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:38576365/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:31079111/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:38395430/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:34659311/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:37060813/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:2199892/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:5168425/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:10012630/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:11238958/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:9069075/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:7927699/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:12855515/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:7718911/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:14186159/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:15888166/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:16151865/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:7431630/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:1732028/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:7112115/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:17901327/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:19168530/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:19336734/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:22260716/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:4801690/1‑65 GCTGTCAAACATGAGAATTCAATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:32396244/1‑65 gGTCAAACATGAGAATTCCATCCGCTACTCCTGGAGAAGTATTATTTCGCGGGTGAACCCACTCCTGG > 1:18255778/2‑68 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:16460028/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:30356936/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:30649455/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG > 1:15397029/1‑68 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:28233953/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:19686184/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:27379230/68‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGTAACGACTCCTGGTTTGT < 1:9591667/68‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:9401549/68‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:8975749/68‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:13608512/68‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:20062566/68‑1 ACATGAGAATTCCATCCGCTTCTCGTTGAGAATTATTTTTTCGCGGGTGAAACGCCTCCTGGTTTGT > 1:21461332/1‑67 ACATGAGAATTCCATCCGCTTCTCCTTGATAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:8228551/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:34214682/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:11821409/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:17685166/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:24866781/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:1250782/1‑67 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:29274646/1‑67 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:23391793/1‑67 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:10344381/1‑68 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:29782162/1‑68 AGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAA > 1:31941319/1‑67 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:25289925/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:27825304/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:28916176/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:8709426/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:3793848/67‑1 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCaa > 1:36614829/1‑66 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA > 1:16259969/1‑68 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA > 1:3562260/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:32848998/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGA > 1:18605002/1‑45 CATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG < 1:39062276/68‑1 GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/360029‑360096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG > CP009273/3508417‑3508483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |