New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1092557NA (NA)12 (0.030)
+GC		 6/108 NT NA intergenic (+272/+464) ycdU/serX putative inner membrane protein/tRNA‑Ser
?CP009273 = 1092559 NA (NA)intergenic (+274/+462) ycdU/serX putative inner membrane protein/tRNA‑Ser

TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  CP009273/1092559‑1092499
                         ||                                                             
TGCGTTCACGGTCTGTCCAACTGGCGCCCGGCAGTTGGACCGGCCGTGAACGCAGTGTGCGGGCGGC                       >  1:19743431/1‑67
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGCCCGTGAACGCAGTGAGCGGGCTGC                       >  1:28567346/1‑67
  CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCC                     >  1:31881825/1‑67
      CACGGTCTGTCCAACTGGCGCCAGCCAGTTGGGCAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGG                >  1:23605681/1‑68
      CACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGG                >  1:23985887/1‑68
          GTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCCGTGAGCGGGCTGCCCGCACGGCGc            >  1:333007/1‑67
           TCTGTCCAACTGGCGCCAGCCAGTTGGCCAGCCCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGc            >  1:35923133/1‑66
           TCTGTCCAACTGGCGCCAGCCAGTTGGACCGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA            >  1:34266332/1‑67
           TCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA            >  1:10198661/1‑67
           TCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCGGCGCGCAGGGCGA            >  1:2120559/1‑67
               gaCAACTGGCGCCACCCAGTTGGACAGACCGGGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAA       <  1:8723980/66‑1
                CCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAA       >  1:19353058/1‑67
                    CTGGCGCCCCCCAGTTGGACAGACCGAGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  1:9587257/68‑1
                    CTGGCGCCAGCCAGTAGGACAGACCGGGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  1:31811060/68‑1
                         ||                                                             
TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  CP009273/1092559‑1092499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.