New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2787742 =	458 (0.960)	27 (0.070)	9/96	NT	7.0%	coding (131/1401 nt)	gabP	gamma‑aminobutyrate transporter
	?	CP009273	2787778 =	322 (0.790)					coding (167/1401 nt)	gabP	gamma‑aminobutyrate transporter

CCATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2787816‑2787742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  >  CP009273/2787778‑2787843                                                                                                                                               CCATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACC                                                                           >  1:35931768/1‑68 CCATTTCCGCCAACATCCGCAAAATCATAACCACCAGTAGCCCGGCGAACAGATAGCCCAGTAATACC                                                                           >  1:38608597/1‑68  CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG                                                                          <  1:9031785/68‑1  CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG                                                                          <  1:3245371/68‑1  CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG                                                                          <  1:16093296/68‑1   ATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGC                                                                         <  1:10114396/68‑1   ATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGC                                                                         <  1:39058315/68‑1    TTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCC                                                                        <  1:373450/68‑1    TTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCC                                                                        <  1:32022814/68‑1    TTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCC                                                                        >  1:34292480/1‑68     TTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCG                                                                       >  1:4543154/1‑68     TTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCG                                                                       >  1:233843/1‑68     TTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCG                                                                       >  1:37131889/1‑68     TTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCG                                                                       >  1:21637542/1‑68     TTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCG                                                                       >  1:14273791/1‑68     TTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCG                                                                       >  1:17318206/1‑68      TCCGCCAACATCCGCATAATGATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG                                                                      <  1:39577066/68‑1      TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG                                                                      >  1:18018248/1‑68      TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG                                                                      <  1:18601298/68‑1      TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG                                                                      <  1:32438288/68‑1      TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG                                                                      <  1:4844970/68‑1      TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG                                                                      <  1:15297280/68‑1      TCCGCCAACATCCGCATAATCATAACCACAAGTACCCCGGCGAACAGATAGGCCAGTAATACCGCCcg                                                                      >  1:26020778/1‑66       CCGCCAACATCCTCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG                                                                     <  1:22726421/68‑1       CCGCCAACATCCGCATAATCATAACCACCTGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG                                                                     <  1:31038478/68‑1       CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG                                                                     <  1:6003304/68‑1       CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG                                                                     <  1:5862758/68‑1       CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG                                                                     <  1:21150137/68‑1       CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG                                                                     <  1:4185680/68‑1       CCGCCAACATCCGCATAATCAAAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG                                                                     <  1:17495838/68‑1         GCCAACATCCGCATACTCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCT                                                                   <  1:10156515/68‑1         GCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCT                                                                   <  1:37561917/68‑1         GCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCT                                                                   <  1:19262599/68‑1         GCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCT                                                                   <  1:36226783/68‑1           ctACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTAC                                                                 <  1:32177198/66‑1           CAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTAC                                                                 <  1:5302337/68‑1           CAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTAC                                                                 <  1:30568076/68‑1           CAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTAC                                                                 <  1:11459658/68‑1            AACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACT                                                                <  1:38392895/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:6557552/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:37499104/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:4459068/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:15177362/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:34422128/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:8208349/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:18965826/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:21832326/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:7288020/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:23397627/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:23976839/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:28594424/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:31544518/68‑1                 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:23494232/68‑1                 CCGCAAAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG                                                           <  1:17096322/68‑1                  CGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGT                                                          <  1:16723267/68‑1                   GCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTT                                                         <  1:24559302/68‑1                      TAATCATCACCACCAGTAGCCCGGCGAACAGATCGGCCAGAAATACCCCCGGGCTACTGGTGGTTATG                                                      <  1:30623640/68‑1                      TAATCATAACCCCCAGTAGCCCGGCGAACAGATCGGCCAGAAATACCGCCGGGCTACTGGTGGTTATG                                                      <  1:659586/68‑1                      TAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATG                                                      <  1:35412470/68‑1                         TCATAACCCCCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATGATT                                                   <  1:32414327/68‑1                           ATAACCACCAGTCGCCCGGCGAACAGATAGGCCAGTAATCCCGCCGGGCTACTGGTGGTTATGATTAT                                                 <  1:7562871/68‑1                           ATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATGATTAT                                                 <  1:26733253/68‑1                           ATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAAAACCGCCGGGCTACTGGTGGTTATGATTAT                                                 <  1:28016736/68‑1                             AACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATGATTATGC                                               <  1:37711102/68‑1                               CCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATGATTATGCGG                                             <  1:8950385/68‑1                                                AACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGC                            <  1:38671270/68‑1                                                                    CGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCG        >  1:3959623/1‑68                                                                    CGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCG        >  1:6275325/1‑68                                                                    CGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCG        >  1:10863041/1‑68                                                                    CGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCG        >  1:37185826/1‑68                                                                    CGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCG        >  1:15498465/1‑68                                                                     GCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGG       >  1:15122971/1‑68                                                                      CCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGT      >  1:34327244/1‑68                                                                      CCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGT      >  1:12261130/1‑68                                                                      CCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGT      >  1:10059163/1‑68                                                                       CGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTT     <  1:1442303/68‑1                                                                        GGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTC    >  1:29057453/1‑68                                                                        GGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTC    >  1:8600528/1‑68                                                                          GCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  >  1:30426075/1‑68                                                                          GCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  >  1:22281616/1‑68                                                                           CTACTGGTGGTTTTGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:31760324/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:31848668/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:31803664/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:29754980/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:23203226/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:7528197/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:18692005/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:8103507/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:17418651/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:8825904/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:14836444/67‑1                                                                           CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  <  1:14288085/67‑1                                                                                                                                               CCATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2787816‑2787742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT  >  CP009273/2787778‑2787843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.