| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2791412 = | NA (NA) | 3 (0.010) | 3/100 | NT | NA | noncoding (1/30 nt) | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2791442 = | NA (NA) | intergenic (+39/+8) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated | |||||
AGAAGGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2791483‑2791412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > CP009273/2791442‑2791508 AGAAGGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGT < 1:24062505/67‑1AGAAGGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGT < 1:20860766/67‑1 AAGGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCG > 1:35741271/1‑68 AGGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGG < 1:36494736/68‑1 GGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGGC > 1:9737680/1‑68 GGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGGC > 1:93307/1‑68 GGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGGC > 1:32650208/1‑68 GGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGGC > 1:21624736/1‑68 GGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGGC > 1:19190791/1‑68 GGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGAGCGTCAGGC > 1:32500221/1‑68 CGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGGCCTCAGTAATTAGA < 1:20257313/67‑1 TCTAATTACTGAGGCCGGATGGCGCTGCTAGGGCGCGTCCGGCCTCAGTAATTAGATCAGGAAATCG < 1:3535630/67‑1 ACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGA < 1:11171338/68‑1 TCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGG < 1:3421171/68‑1 TCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG > 1:16408077/1‑67 TCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG > 1:7763028/1‑67 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < 1:4936808/68‑1 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < 1:34408934/68‑1 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < 1:13929930/68‑1 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < 1:24570376/68‑1 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < 1:11226224/68‑1 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < 1:9712059/68‑1 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < 1:20794499/68‑1 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < 1:20744038/68‑1 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < 1:20341724/68‑1 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG > 1:24058706/1‑66 CCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG > 1:455504/1‑66 CGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCT < 1:6861452/68‑1 GCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTt > 1:25834523/1‑67 GCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC > 1:13276645/1‑68 GCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC > 1:32065781/1‑68 CCTCAGTAATTAGATCAGGAAATCGTCGAGTGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < 1:31792153/67‑1 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > 1:11618668/1‑68 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > 1:25070655/1‑68 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > 1:14508920/1‑68 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > 1:2348812/1‑68 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > 1:21568571/1‑68 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > 1:18731883/1‑68 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < 1:16744449/67‑1 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < 1:36978378/67‑1 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < 1:22174819/67‑1 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < 1:16192046/67‑1 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < 1:20322555/67‑1 CCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGAGCCTGAGCAATTGGCTTC < 1:30903182/67‑1 AGAAGGTAAATCTCTCGACGATTTCCTGATCTAATTACTGAGGCCGGATGTCGCTGCTAGGGCGCGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2791483‑2791412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > CP009273/2791442‑2791508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |