| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 7 (0.020) | 5/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 1607 total aligned reads displayed.
AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTG > CP009273/3729614‑3729748 | tgtaccaggataaccaacggttaatcgcggcgcatatgtaattgcatttccttgAGCCTTATCCGACt > 1:37072974‑M1/55‑68 (MQ=255) aCGCACCAACAACGCTTCAGTCTCGTAGCTAAACTGCCTGAGACAAAGTAAAAATCCATATCCGACTg > 1:26232328/1‑68 (MQ=255) aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:20628099/1‑68 (MQ=255) aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:10007034/1‑68 (MQ=255) aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT > 1:28784447‑M1/1‑67 (MQ=255) gCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGAc > 1:37743664/1‑68 (MQ=255) ccAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAag > 1:10342533‑M2/1‑66 (MQ=255) ccAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAag > 1:7236005‑M2/1‑66 (MQ=255) caacaaCGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagt > 1:13318766‑M2/1‑65 (MQ=255) acaacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcg > 1:24571255‑M2/1‑63 (MQ=255) acaacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcg < 1:2850931‑M2/68‑6 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:6422200‑M2/1‑62 (MQ=255) ttCAGGCTCGTAGCTCTACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataagg > 1:12326695‑M2/1‑56 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:12111149‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:22197383‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:36437919‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:18074499‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataag < 1:3844825‑M2/66‑12 (MQ=255) gCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCaa > 1:16783773/1‑68 (MQ=255) cTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACATGTCGGTTAAGGCTCAAg > 1:34634826/1‑68 (MQ=255) cTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCa < 1:30201766/66‑1 (MQ=255) cTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg > 1:23066438/1‑68 (MQ=255) cTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg > 1:17015495/1‑68 (MQ=255) cTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg > 1:19069380/1‑68 (MQ=255) cGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGa < 1:30577574/68‑1 (MQ=255) cGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGa < 1:1568099/68‑1 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt < 1:31520143/68‑1 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt < 1:37390566/68‑1 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt > 1:21541565/1‑68 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt < 1:8302387/68‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATg < 1:35036333/66‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:11475052/68‑1 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTtgtcagtcggataaggctttttactttgtcgca > 1:34281572‑M1/1‑35 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:1944498/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:22586035/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt < 1:25439593/68‑1 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:33006352/1‑68 (MQ=255) cTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTa < 1:1733023/68‑1 (MQ=255) cTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTa < 1:24362591/68‑1 (MQ=255) tGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTAc > 1:29388590/1‑68 (MQ=255) tGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTAc < 1:11063718/68‑1 (MQ=255) gCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACa < 1:38785437/68‑1 (MQ=255) gCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACa < 1:37948670/68‑1 (MQ=255) gCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACa < 1:16362643/68‑1 (MQ=255) gCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACa < 1:9357407/68‑1 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:15388882/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:22066297/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:8974254/1‑67 (MQ=255) aaaGTAAAAAGCCTTATCCGACTGACAagtcggataaggctttttactttgtctcaggcagttgagct > 1:2663503‑M2/1‑27 (MQ=255) aaGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGcgccgc < 1:34070683/68‑1 (MQ=255) aaGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGcgccgc < 1:38237105/68‑1 (MQ=255) aGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCcgcg > 1:35440908/1‑68 (MQ=255) aGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCcgcg < 1:33310763/68‑1 (MQ=255) aGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCcgcg < 1:4714626/68‑1 (MQ=255) aGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCcgcg < 1:5046232/68‑1 (MQ=255) aaaaaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGAt < 1:11791022/67‑1 (MQ=255) AGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc > 1:28115502‑M1/1‑68 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:20143670‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:21077533‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:129764‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:14663627‑M1/1‑13 (MQ=255) GCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg < 1:19807139‑M1/68‑1 (MQ=255) GCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg < 1:12747390‑M1/68‑1 (MQ=255) GCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg < 1:31139216‑M1/68‑1 (MQ=255) GCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg < 1:4340218‑M1/68‑1 (MQ=255) GCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg < 1:3601919‑M1/68‑1 (MQ=255) GCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg < 1:32697567‑M1/68‑1 (MQ=255) GCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg < 1:6823379‑M1/68‑1 (MQ=255) ccTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaa > 1:13999708‑M1/1‑12 (MQ=255) CCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGt < 1:23343817‑M1/68‑1 (MQ=255) cTTATCCGACTtgtcagtcggataaggctttttactttgtctcagacagttgagctacgagcctga < 1:25034627‑M1/66‑56 (MQ=255) TTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTg > 1:39168092‑M1/1‑68 (MQ=255) TTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTg > 1:17814207‑M1/1‑68 (MQ=255) TTATCCGACTGACAAGTCGGATAAGGCTCAAAGAAATGCAATTACATATGCGCCGCGATTAACCGTTg > 1:27105112‑M1/1‑68 (MQ=255) tATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcg < 1:14304111‑M1/68‑60 (MQ=255) TATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg > 1:16021243‑M1/1‑68 (MQ=255) TATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg > 1:10684817‑M1/1‑68 (MQ=255) tCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgtt < 1:17548469‑M1/68‑62 (MQ=255) ccGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttg > 1:9690287‑M1/1‑6 (MQ=255) ccGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttg > 1:1352082‑M1/1‑6 (MQ=255) ccGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttg > 1:18613365‑M1/1‑6 (MQ=255) ccGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttg > 1:21249130‑M1/1‑6 (MQ=255) CCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa < 1:21713608‑M1/68‑1 (MQ=255) CCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa < 1:5406166‑M1/68‑1 (MQ=255) CCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa < 1:27487780‑M1/68‑1 (MQ=255) CCGACTGACAAGTCGGATAAGGCTCAAGGAAATGAAATTACATATGCGCCGCGATTAACCGTTGGTTa < 1:7456384‑M1/68‑1 (MQ=255) tACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:25915914‑M1/2‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:35758796‑M1/1‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:7680958‑M1/1‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:23766588‑M1/1‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:5770134‑M1/1‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:27750847‑M1/1‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:29777489‑M1/1‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:39569893‑M1/1‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:3237066‑M1/1‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:33645677‑M1/1‑68 (MQ=255) GACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc > 1:36830839‑M1/1‑68 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:8664169‑M1/1‑3 (MQ=255) cTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttgg > 1:32010002‑M1/1‑2 (MQ=255) CTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCt > 1:6110938‑M1/1‑68 (MQ=255) | AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTG > CP009273/3729614‑3729748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |