| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 292 (0.610) | 468 (1.620) +CGTTTTTTTGGATGGAGGAATT |
39/68 | NT | 66.7% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 478 (1.010) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 1243 total aligned reads displayed.
TGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAA > CP009273/66493‑66627 | gtgtTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAgg < 1:10781576/68‑1 (MQ=255) acttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacggg > 1:7276542‑M1/67‑68 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:19765983‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:27296548‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt > 1:32668140‑M1/66‑68 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:15511312‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:38387814‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctacatccaaaaaaacgGGt < 1:33785765‑M1/3‑1 (MQ=255) tgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTAt < 1:37195619‑M1/5‑1 (MQ=255) tgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTAt < 1:2516708‑M1/5‑1 (MQ=255) gccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATg > 1:21650553‑M1/63‑68 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:5930464‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga > 1:34858049‑M1/61‑68 (MQ=255) ggCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGGATGgag > 1:26426962/1‑68 (MQ=255) cctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGgaga < 1:19090434‑M1/10‑1 (MQ=255) cctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGgaga < 1:26133668‑M1/10‑1 (MQ=255) cctgcccacatcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGgaga < 1:22293883‑M1/10‑1 (MQ=255) ctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaataaaacgGGTATGGAGaa > 1:2279023‑M1/58‑68 (MQ=255) ctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGaa > 1:2195650‑M1/58‑68 (MQ=255) ctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGaa > 1:651451‑M1/58‑68 (MQ=255) gcgcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAAc < 1:28169595/68‑1 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:10005284‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:11818073‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:32949863‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:35865547‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:37433510‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:37875091‑M1/56‑68 (MQ=255) cccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa < 1:11028368‑M1/14‑1 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAAc < 1:36757412/66‑1 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACa < 1:10336966/67‑1 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:882362‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:2481125‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:4347863‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:1789264‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAg < 1:5324569‑M1/15‑1 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAg > 1:12563577‑M1/54‑68 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAg > 1:23995332‑M1/54‑68 (MQ=255) ccacttcaaaaaagcgcgatttttctacatgaattcctccatccaaaaaaacgGGTATGGAGAAACAg > 1:9390118‑M1/54‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:27741267‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:36128030‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:17700511‑M1/53‑68 (MQ=255) acttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTa < 1:15767631‑M1/17‑1 (MQ=255) tcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTagag < 1:12096290‑M1/20‑1 (MQ=255) tcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTagag < 1:27093123‑M1/20‑1 (MQ=255) caaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTagaga > 1:23180725‑M1/48‑68 (MQ=255) caaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTagaga > 1:9689084‑M1/48‑68 (MQ=255) caaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTagaga > 1:29467646‑M1/48‑68 (MQ=255) tGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTagaga < 1:28695378/67‑1 (MQ=255) cTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGtt > 1:17495677/1‑67 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:23638572‑M1/24‑1 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:1229492‑M1/24‑1 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:39592667‑M1/24‑1 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:31589507‑M1/24‑1 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:31222124‑M1/24‑1 (MQ=255) aagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGc > 1:2007777‑M1/43‑68 (MQ=255) tACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaa < 1:29914831/68‑1 (MQ=255) aCCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa > 1:34492172/1‑68 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:12984211/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:20343013/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:20680478/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:1822155/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:1857328/1‑67 (MQ=255) tttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGc > 1:4987740‑M1/33‑68 (MQ=255) cGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGc < 1:13268110/68‑1 (MQ=255) ttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCg > 1:29129677‑M1/32‑68 (MQ=255) ttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCa > 1:16105202‑M1/29‑68 (MQ=255) tcatgaattcctccatccaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:13626042‑M1/27‑68 (MQ=255) ccGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:14033939/68‑1 (MQ=255) ccGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg < 1:33172407/67‑1 (MQ=255) agaCCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg > 1:15131083/1‑68 (MQ=255) aattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg < 1:25551655‑M1/46‑1 (MQ=255) cccGCACGCGTCGCCCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:3638847/1‑67 (MQ=255) cccGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg < 1:2458865/66‑1 (MQ=255) cccGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:11280888/1‑67 (MQ=255) ccGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATc < 1:21186788/68‑1 (MQ=255) cctccctccaaacaaaccGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:34127504‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:4668734‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:11612924‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:39322711‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:8157399‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:28466019‑M1/50‑1 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:3541821‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:17207764‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:32516507‑M1/19‑68 (MQ=255) cGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:19370819/68‑1 (MQ=255) gCACTCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg < 1:14444098/68‑1 (MQ=255) gCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGGTGCGATAAAAAGCGTCAGGTAGGATCCg < 1:14852928/68‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:22611304‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:25865839‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:3090842‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:30568537‑M1/50‑1 (MQ=255) tccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa < 1:8368196‑M1/55‑1 (MQ=255) ccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa < 1:2437951‑M1/55‑1 (MQ=255) caaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:16483054‑M1/11‑68 (MQ=255) aaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATg < 1:16894408‑M1/62‑1 (MQ=255) cTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg < 1:38873708/68‑1 (MQ=255) aaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg > 1:7800562‑M1/6‑68 (MQ=255) aacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGa > 1:6859457‑M1/5‑68 (MQ=255) cgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa > 1:26688608‑M1/3‑68 (MQ=255) aGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaa > 1:31966192/1‑68 (MQ=255) | TGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAA > CP009273/66493‑66627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |