New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 248296 =176 (0.370)20 (0.050) 8/96 NT 10.9% coding (912/1056 nt) dinB DNA polymerase IV
?CP009273 248360 = 177 (0.430)coding (976/1056 nt) dinB DNA polymerase IV

Only 100 of 234 total aligned reads displayed.

TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGG  >  CP009273/248229‑248362
                                                                   |                                                                  
ccagttgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccg                                                                    >  1:39538871‑M1/68‑68 (MQ=255)
  aTTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGcc                                                                  >  1:31311465/1‑68 (MQ=255)
  aTTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGcc                                                                  >  1:6805746/1‑68 (MQ=255)
   ttGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGcc                                                                  >  1:7760261/1‑67 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg                                                               <  1:5151518‑M1/6‑1 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg                                                               <  1:17469531‑M1/6‑1 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg                                                               <  1:16422904‑M1/6‑1 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg                                                               <  1:12561559‑M1/6‑1 (MQ=255)
     gCTCGCCAGGGTGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACACAGTAGCACGTCTGGCcgcg                                                               <  1:11760155/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:10035462/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               >  1:29806167/1‑68 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:1857130/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:7204421/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:14264973/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:12145598/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:9142869/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               >  1:11174514/1‑68 (MQ=255)
     gCTCGCCAGGGGGGGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:12475304/68‑1 (MQ=255)
      cTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               >  1:1916150/1‑67 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:26561524‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:11881128‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:30872006‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:10765538‑M1/8‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGc                                                             <  1:29840656/68‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGc                                                             <  1:23384248/68‑1 (MQ=255)
        ctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             >  1:10695210‑M1/60‑67 (MQ=255)
        ctttccacttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             >  1:26998753‑M1/60‑67 (MQ=255)
        cGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGc                                                             <  1:32815403/67‑1 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:25063391/1‑68 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:21387766/67‑1 (MQ=255)
           cAGGGGGGGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:2791013/67‑1 (MQ=255)
               gggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:3171234/1‑68 (MQ=255)
               gggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:16194192/1‑68 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:9185355/67‑1 (MQ=255)
                 gTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:13409018/1‑66 (MQ=255)
                 gTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAg                                                    <  1:32976027/67‑1 (MQ=255)
                  tGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:34799268/1‑65 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:16935147/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                >  1:19405535/1‑67 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:466954/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGAt                                               <  1:22507809/68‑1 (MQ=255)
                      aTTAAAGTTCGACGATTTTCAGCAAACCACACAGGAGCACGTCTGGCAGAGGCTGAATAAAGCTGa                                                >  1:37641953/1‑66 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           <  1:5190279/68‑1 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           <  1:19820271/68‑1 (MQ=255)
                          aaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           >  1:3256130/1‑67 (MQ=255)
                          aaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           >  1:21732203/1‑67 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:25706246/1‑68 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:5743856/1‑68 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:1966101/1‑68 (MQ=255)
                           aGTTCCACGATTTTCAGCAAACCAAAAAGCAGCACGTCTCGCCTCGGCTGAATAAAGCTGAGCAAATc                                         >  1:33210218/1‑68 (MQ=255)
                            gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:10352415/1‑67 (MQ=255)
                            gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:21827364/1‑67 (MQ=255)
                                     ttttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc                               <  1:4990890/68‑1 (MQ=255)
                                     ttttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc                               <  1:13711395/68‑1 (MQ=255)
                                     atgcagccccaccagacgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc                               <  1:6944932‑M1/38‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                              <  1:5494095/68‑1 (MQ=255)
                                       gcagccccaccagacgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGt                             <  1:624194‑M1/40‑1 (MQ=255)
                                       gcagccccaccagacgcacaccgcgcccGCCGCGGCGGCAGAAAGCTGCTCTAATCGCCCccgcgcgg                             <  1:30531323‑M1/40‑2 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:26419530/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:25924039/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:24842280/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:3414783/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:34238103/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:14709643/1‑67 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:20170853/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:22888018/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAcc                       <  1:8038856/68‑1 (MQ=255)
                                             aaaCCACCCAGAAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc                        <  1:752329/67‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:22263370/68‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:36730556/68‑1 (MQ=255)
                                                  accCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGa                  >  1:23010975/1‑68 (MQ=255)
                                                    ccAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATg                >  1:39367059/1‑68 (MQ=255)
                                                      gcacaccgcgcccGCCGCGGCTGAATAAAGCGGGTCTAATCGCCACCGCGCGTAAAACCTGGGATGa               <  1:15363589‑M1/54‑1 (MQ=255)
                                                      gcacaccgcgcccGCCGCGGCGGAATAAAGCTGATCTAATCGCCACCGCGCGGAAAACCTGGGATGa               <  1:38821113‑M1/54‑1 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:20268870/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:4857795/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:38077218/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:23858535/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:18051480/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:31034969/1‑68 (MQ=255)
                                                       cacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             <  1:27464680‑M1/56‑1 (MQ=255)
                                                         aGCACGTCTGGCCTCGTCTGAATCAAGCTGATCTAACCGCCACCGCGCGTAAAACCTGGGATGAAc             <  1:28559086/66‑1 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:11974724/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:37171972/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:6513965/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:4410013/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:39048011/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:36448427/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:35194487/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:248857/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATAGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:10517667/1‑67 (MQ=255)
                                                          gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc          >  1:29900851/1‑68 (MQ=255)
                                                          gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc          >  1:29010330/1‑68 (MQ=255)
                                                          accgcgcccGCCGCGGCGGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCGGGGATGGAcgcc          <  1:36012239‑M1/59‑1 (MQ=255)
                                                            cgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgccgc        <  1:33723959‑M1/61‑1 (MQ=255)
                                                            aCGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgccgc        >  1:25560829/1‑68 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcgg      <  1:20780944/68‑1 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcgg      <  1:38242045/68‑1 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcggc     >  1:36305974/1‑68 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg  <  1:28122339/68‑1 (MQ=255)
                                                                   |                                                                  
TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGG  >  CP009273/248229‑248362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.