| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 359 (0.760) | 234 (0.660) +CTGATCAGTGAATT |
20/84 | NT | 46.2% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 369 (0.780) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 697 total aligned reads displayed.
CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG > CP009273/360003‑360137 | ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat > 1:35978740/1‑68 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:34114796/68‑1 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:32382327/68‑1 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:29297210/68‑1 (MQ=255) gagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgatgat > 1:10472205/1‑68 (MQ=255) gagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgatgat > 1:836060/1‑68 (MQ=255) gagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgatgat > 1:25321975/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:12646635/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:26861863/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:23139331/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:21957408/1‑68 (MQ=255) gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:24123240/1‑67 (MQ=255) gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:2086328/1‑67 (MQ=255) aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGc < 1:9762803/67‑1 (MQ=255) aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGc < 1:19957025/67‑1 (MQ=255) tCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTc < 1:15866680/68‑1 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa > 1:37070692‑M1/55‑68 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa > 1:36719217‑M1/55‑68 (MQ=255) ctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaaa > 1:38329542‑M1/53‑67 (MQ=255) ctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaaa > 1:18309220‑M1/53‑67 (MQ=255) ctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAAc > 1:7097532‑M1/53‑68 (MQ=255) tacccggatattatcgtgagtatgcgtcatcgccattaattgactgatcagTGATAAGCTGTCAAACa > 1:8516419‑M1/52‑68 (MQ=255) gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACa > 1:15357630/1‑68 (MQ=255) ttGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATg < 1:5954081/68‑1 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg < 1:28731916‑M1/19‑1 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:11076328‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg < 1:34462168‑M1/19‑1 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:544479‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:23481563‑M1/50‑68 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:35802783‑M1/20‑1 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:32943278‑M1/20‑1 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:30625306‑M1/20‑1 (MQ=255) ggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATgaga > 1:16310405‑M1/47‑68 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATgaga > 1:25671831/1‑68 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:21826474‑M1/24‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:36449561‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt > 1:13749869‑M1/44‑68 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:39546944‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:38971820‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:26676312‑M1/24‑1 (MQ=255) gCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAAt > 1:12153808/1‑67 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:14514459‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATTc > 1:39336710‑M1/43‑68 (MQ=255) ttatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATTcc > 1:23861383‑M1/42‑68 (MQ=255) ggCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC > 1:9467724‑M1/1‑68 (MQ=255) tatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:4429317‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:263285‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:29929586‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:19522613‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:18948390‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:18642232‑M1/28‑2 (MQ=255) aacgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:10690582‑M1/28‑2 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:31231330‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:32001946‑M1/29‑3 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:28308960/68‑1 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:24891467/68‑1 (MQ=255) ccATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc > 1:21362087/1‑67 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:29028773/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:17292018/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt < 1:924018/68‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt < 1:30977267/68‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt < 1:11795920/68‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATCATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:35367749/1‑68 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc < 1:10050566/65‑1 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:15595726/1‑68 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg < 1:22264378/68‑1 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:33497911/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:5010618/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:4761908/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:562898/68‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:16849130/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:1133628/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:34706980/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:16614091/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg < 1:27978762/68‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:8849949/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg < 1:13104545/68‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:25935244/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:33772954/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:13295012/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:14199909/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:20424646/1‑68 (MQ=255) aGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgg > 1:14745242/1‑67 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATgtcggga > 1:734296/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:19328544/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:37449254/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:3612649/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTACGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:31705795/1‑67 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt < 1:17957575/67‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCt < 1:21137707/68‑1 (MQ=255) cagtgataagCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:6648365‑M1/4‑30 (MQ=255) cagtgataagCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:17466636‑M1/4‑30 (MQ=255) cagtgataagCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:29500754‑M1/4‑30 (MQ=255) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGcc < 1:38050959/68‑1 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:22714611‑M1/3‑29 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:37668803‑M1/3‑29 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:7802135‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:2725221‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:2771377‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:30467371‑M1/2‑28 (MQ=255) | CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG > CP009273/360003‑360137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |