| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 577278 | 295 (0.620) | 16 (0.040) | 8/96 | NT | 6.0% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
Only 100 of 506 total aligned reads displayed.
GGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGAT > CP009273/577212‑577345 | ggggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAgg > 1:13133354/1‑68 (MQ=35) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:17828754/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:14937334/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:14752874/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:1891150/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:11448509/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:31650788/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:12742655/1‑68 (MQ=33) ggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAgggg > 1:16640761/1‑68 (MQ=31) ggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAgggg > 1:1126523/1‑68 (MQ=31) ggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAgggg > 1:3085200/1‑68 (MQ=31) ggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg < 1:19959410/67‑1 (MQ=31) cgcgTTATTAATTTCTGAACTCGGGCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGccacgt < 1:276245‑M1/68‑7 (MQ=255) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:4324417/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:37839165/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:20231993/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:37449541/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:6527099/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:5546650/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:35718937/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:23922192/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:3340293/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:7912177/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:32765391/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:13625878/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:8695578/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:28098821/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAAAGGt < 1:21756646/67‑1 (MQ=14) tCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa > 1:23252113/1‑68 (MQ=35) tCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa > 1:10025040/1‑68 (MQ=35) tCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa > 1:10877697/1‑68 (MQ=35) tCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa < 1:11835771/68‑1 (MQ=35) tCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGGGGAACGGTACa < 1:20383858/68‑1 (MQ=25) cGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAg < 1:26977165/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:25818893/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:34039903/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:16333158/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:15519259/68‑1 (MQ=35) ccGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTg > 1:1954302/1‑68 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:6819935/68‑1 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:34627202/68‑1 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:18240634/68‑1 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:14082812/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:3720477/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:24919098/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:18444609/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:18567434/68‑1 (MQ=35) ttACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGt > 1:33142950/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:7255152/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:39556030/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa < 1:9043228/68‑1 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:10495177/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa < 1:27266724/68‑1 (MQ=35) ggAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAg < 1:1241557/68‑1 (MQ=39) aaaaTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGAt > 1:38272409/1‑68 (MQ=40) aaaTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGAt < 1:35299018/67‑1 (MQ=40) aaaTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGAt > 1:30123704/1‑67 (MQ=40) aaTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgc > 1:22524487/1‑68 (MQ=255) aTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgca > 1:20728179/1‑68 (MQ=255) aTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgca > 1:38936724/1‑68 (MQ=255) ttACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaa > 1:5136632/1‑68 (MQ=255) ccTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagca < 1:22796012/68‑1 (MQ=255) ccTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagca < 1:15698542/68‑1 (MQ=255) ccTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagca < 1:24797879/68‑1 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:5259778/1‑68 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:29161229/1‑68 (MQ=255) tGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcaga < 1:17152272/68‑1 (MQ=255) ggTTATCGCCGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgac < 1:29343386‑M1/68‑54 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTTGGTGAAAGATGCAGAAGCAGaaaa > 1:2976108/1‑68 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:608884/1‑68 (MQ=255) tCGCCGGACGGGGAGGTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACt < 1:35955645/68‑1 (MQ=255) cGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:38489987/1‑64 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:2102501/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:22240144/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt < 1:32141982/68‑1 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:24446676/1‑68 (MQ=255) ccGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatc > 1:8842432‑M1/1‑7 (MQ=255) ccGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:32312605/1‑67 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:36477064‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:9655381‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:26212057‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:25462675‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:34956066‑M1/67‑62 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:15321341‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:36909597‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:21183089‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:28388507‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:3119582‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt > 1:31828435‑M1/1‑5 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:25098132‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgagcttcaacgagatgccacgatgactcatcactgt < 1:8424448‑M1/68‑64 (MQ=255) gAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCg > 1:28689130/1‑68 (MQ=255) aaGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCgg > 1:8138100/1‑68 (MQ=255) aGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttga < 1:14440291‑M1/68‑67 (MQ=255) aGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGa < 1:10674736/68‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:21389526‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:7127780‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:7549283‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:30571194‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:4830813‑M1/1‑1 (MQ=255) | GGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGAT > CP009273/577212‑577345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |