| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 578 (1.220) | 27 (0.070) | 11/92 | NT | 6.2% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 339 (0.870) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 794 total aligned reads displayed.
TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 | accttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgAc < 1:708009‑M1/2‑1 (MQ=255) tCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACg > 1:32553106/1‑68 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:10535945‑M1/3‑1 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:31908272‑M1/3‑1 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:36397292‑M1/3‑1 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:37241172‑M1/3‑1 (MQ=255) cttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:25197198‑M1/3‑1 (MQ=255) ttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgc < 1:19313434‑M1/5‑1 (MQ=255) tcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcg > 1:13984496‑M1/63‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:34064177‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:6070103‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:27680578‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:18105045‑M1/61‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCa > 1:5601209/1‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCa > 1:9532277/1‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCa > 1:31351141/1‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCa > 1:30127270/1‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCa > 1:24473617/1‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCa > 1:13692092/1‑68 (MQ=255) gttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCAtt < 1:22628896‑M1/10‑1 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCGTCAGAATGGCTTGTTTACCGGGCGTACGGCGCATTTCg > 1:28556616/1‑68 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:32271011/1‑68 (MQ=255) tCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGa > 1:11855690/1‑68 (MQ=255) cGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaa < 1:11224050/68‑1 (MQ=255) gCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaaaa > 1:1619490/1‑67 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCg > 1:38574741/1‑68 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCg > 1:8749509/1‑68 (MQ=255) ctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAgg > 1:7396544/1‑68 (MQ=255) tctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGt < 1:21564060/68‑1 (MQ=255) ctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGtt > 1:7650675/1‑68 (MQ=255) cAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGtt > 1:39425882/1‑65 (MQ=255) aaCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctg < 1:8082449/68‑1 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:39122305/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:36842631/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:35751757/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:35618545/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:34676234/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:9121730/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:28811093/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:1008182/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:14676385/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGGGGTTGCTGCGt < 1:22222482/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:29985691/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:33278642/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:16734871/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:20136079/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:26622695/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:35210967/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:12553833/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:281040/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:10798725/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCGTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:5262533/68‑1 (MQ=255) tCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAt > 1:2352310/1‑68 (MQ=255) tCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAt > 1:12317099/1‑68 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt < 1:37460610/68‑1 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt < 1:6326070/68‑1 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt < 1:17395182/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:34361670/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:18542612/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:26918485/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa > 1:24014568/1‑68 (MQ=255) acacctcccgcattatgagcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCaa < 1:8449549‑M1/38‑1 (MQ=255) gCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAt > 1:19769972/1‑68 (MQ=255) gCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAt > 1:1514761/1‑68 (MQ=255) ccATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt > 1:12854825/1‑68 (MQ=255) aGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATgc > 1:15675416/1‑68 (MQ=255) aaTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATgcg > 1:30646024/1‑67 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGcc < 1:1894848/68‑1 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGcc < 1:21297715/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:20391746/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:15831937/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:22903209/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:28982803/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:13162620/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:31619588/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGGTGCTGCGTATTCAATTAATGCGCCGt < 1:11559951/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAAGTTGCTGCGTATTCAATTAATGCGCCGt < 1:4736795/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGAGCATTTCGAAAAGCTATGTTGCTGCGTATTCAATTAATGCGCCGt < 1:23193880/68‑1 (MQ=255) gccttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:27203414/66‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:21132188/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:17670587/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:31039336/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:26284276/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:29294538/67‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:20597209/68‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:30459524/68‑1 (MQ=255) tACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:20857340/1‑67 (MQ=255) aCCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATAc < 1:24848101/68‑1 (MQ=255) aCCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATAc < 1:4309484/68‑1 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:33779045/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:6598590/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:12052575/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTg < 1:1546718/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:28169821/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:33076114/68‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:3827731/1‑68 (MQ=255) gCTTACGGCGCATTTCG‑AAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCa > 1:34905844/1‑68 (MQ=255) cTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc < 1:1433697/67‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:2544813‑M1/66‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:36052141/68‑1 (MQ=255) | TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |