| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1586885 = | NA (NA) | 3 (0.010) | 3/90 | NT | NA | intergenic (‑186/+37) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
| ? | CP009273 | 1586916 = | NA (NA) | intergenic (‑217/+6) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog | |||||
Only 100 of 510 total aligned reads displayed.
TCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCC > CP009273/1586818‑1586952 | tccgcgatcgcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATAtt < 1:29070943‑M2/52‑1 (MQ=255)actaggtgataaaggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtat < 1:15881510‑M1/1‑1 (MQ=255)actaggtgataaaggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtat < 1:31037109‑M1/1‑1 (MQ=255) ccgcgatcgcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTa > 1:8142232‑M2/16‑68 (MQ=255) CCGCGATCGCGGATAAAAAGGAAGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTa < 1:17050985‑M1/68‑1 (MQ=255) taggtgataaaggctatagcgatactcagggcatgctgggagtgaaataaagctggtaaaccgtaTaa < 1:21859698‑M1/3‑1 (MQ=255) ggtgataaaggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtaTAAg < 1:13934434‑M1/4‑1 (MQ=255) cgctcgcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAg > 1:8746374‑M2/13‑67 (MQ=255) cgatcgcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAg > 1:3500701‑M2/13‑67 (MQ=255) CGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAg < 1:32993995‑M1/67‑1 (MQ=255) gtgataaaggctatagcgatactcagggcgtgctgggggtgagatatagctgggaaaccgtaTATGcc < 1:28510526‑M1/6‑1 (MQ=255) gtgataaaggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtaTAAGcc < 1:14538506‑M1/6‑1 (MQ=255) tgataaaggctatagcgatactctgggcaggctgggagtgaaatatagctggtaaaccgtaTAAGc > 1:34707269‑M1/62‑66 (MQ=255) atggcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGcc > 1:34295061‑M2/11‑67 (MQ=255) atcgcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGcc > 1:13706886‑M2/11‑67 (MQ=255) atcgcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGcc > 1:30108497‑M2/11‑67 (MQ=255) atcgcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGcc > 1:31443316‑M2/11‑67 (MQ=255) tcgcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCg < 1:7839666‑M2/58‑1 (MQ=255) gataaaggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtaTAAGCCGc < 1:31129728‑M1/8‑1 (MQ=255) TCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGc > 1:7150512‑M1/1‑68 (MQ=255) cgcggataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCa < 1:24371870‑M2/60‑1 (MQ=255) attggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtaTAAGCCGCATg > 1:18941858‑M1/58‑68 (MQ=255) aaaggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtaTAAGCCGCATg > 1:28873434‑M1/58‑68 (MQ=255) aaaggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtaTAAGCCGCATg > 1:201646‑M1/58‑68 (MQ=255) aaaggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtaTAAGCCGCATg < 1:38496022‑M1/11‑1 (MQ=255) aaaggctatagcgatactcagggcatgctgggagtgaaatatagctggtaaaccgtaTAAGCCGCATg > 1:14901819‑M1/58‑68 (MQ=255) CGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCAt < 1:19746654‑M1/67‑1 (MQ=255) aaggctatagcgatactaagggcatgctgggagtgaaatatagctggtaaaccgtaTAAGCCGCATg < 1:32352088‑M1/11‑1 (MQ=255) ataAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGcc < 1:9430354‑M2/64‑1 (MQ=255) ATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCa < 1:25392025‑M1/68‑1 (MQ=255) ATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCa < 1:11183808‑M1/68‑1 (MQ=255) taAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCa < 1:34063118‑M2/65‑1 (MQ=255) TAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCAt > 1:16152264‑M1/1‑68 (MQ=255) TAAAAAGGAGGATTTAAATAAGGAGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCAt > 1:11769432‑M1/1‑68 (MQ=255) ggaggaTTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGAc > 1:18359148/1‑68 (MQ=255) ggaggaTTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGAc > 1:8927452/1‑68 (MQ=255) ggaggaTTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGAc > 1:28263892/1‑68 (MQ=255) aggaTTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGAc < 1:29646695/66‑1 (MQ=255) tttAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCgg < 1:33159943/68‑1 (MQ=255) tttAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCgg < 1:33459543/68‑1 (MQ=255) tttAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCgg < 1:10759846/68‑1 (MQ=255) tttAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCgg < 1:12889799/68‑1 (MQ=255) tttAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCgg < 1:15187071/68‑1 (MQ=255) tttAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCgg < 1:23998183/68‑1 (MQ=255) ttAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGc < 1:9749842/68‑1 (MQ=255) ttAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGc < 1:5968175/68‑1 (MQ=255) tAAATAATGCGTTGATGCGCCGTTTGAAGTCGGCAATATAAAGCCGCATGCCATCTCGACATGCGGCt < 1:35481476/68‑1 (MQ=255) tAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCt < 1:16784426/68‑1 (MQ=255) aaaTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCtt < 1:27039178/68‑1 (MQ=255) aaaTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCtt < 1:6557724/68‑1 (MQ=255) aaaTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCtt < 1:555298/68‑1 (MQ=255) aaaTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCtt < 1:36682565/68‑1 (MQ=255) aaTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTta > 1:26470227/1‑68 (MQ=255) aaTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCAACTCGACATGAGGCTta > 1:23613034/1‑68 (MQ=255) aaTAAGGCGTTGATGCGCCCTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTta > 1:3952555/1‑68 (MQ=255) aTAAGGCGTTGATGCGGCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat < 1:37039651/68‑1 (MQ=255) aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:4876687/1‑68 (MQ=255) aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:37279643/1‑68 (MQ=255) aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:248521/1‑68 (MQ=255) aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:15361034/1‑68 (MQ=255) aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:17934376/1‑68 (MQ=255) aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:26782559/1‑68 (MQ=255) aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:3081002/1‑68 (MQ=255) aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:10009321/1‑68 (MQ=255) aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:12263233/1‑68 (MQ=255) ggCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACgg > 1:20784466/1‑68 (MQ=255) gCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGt > 1:4519818/1‑68 (MQ=255) cGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGt < 1:27924808/67‑1 (MQ=255) gTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGtt < 1:36122194/67‑1 (MQ=255) gTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGtt < 1:2575723/67‑1 (MQ=255) tGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTAc < 1:20446028/68‑1 (MQ=255) aTGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCa > 1:12690255/1‑68 (MQ=255) aTGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCa > 1:27721521/1‑68 (MQ=255) tGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCa > 1:37927051/1‑67 (MQ=255) gcgcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGc < 1:16424957/68‑1 (MQ=255) gcgcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGc < 1:22240690/68‑1 (MQ=255) gcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCta > 1:406052/1‑68 (MQ=255) cGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCtat < 1:11522882/67‑1 (MQ=255) gTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTatat < 1:33638359/68‑1 (MQ=255) ttGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATAtt > 1:23146422/1‑67 (MQ=255) aaGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTc > 1:5164769/1‑66 (MQ=255) aGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt < 1:13392108/68‑1 (MQ=255) aGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt < 1:19319030/68‑1 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTTTATTTCACt > 1:4199389/1‑67 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt > 1:39046964/1‑67 (MQ=255) cAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAg < 1:22879678/67‑1 (MQ=255) cAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAg < 1:20993839/67‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATg > 1:32626604/1‑67 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:37442028/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:32838826/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:629601/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:27267269/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:6688928/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:31800648/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:9091706/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:22660935/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:26204311/68‑1 (MQ=255) TAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGccc > 1:2746781‑M1/1‑68 (MQ=255) TAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGccc > 1:21407704‑M1/1‑68 (MQ=255) TAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:32111732‑M1/66‑1 (MQ=255) | TCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCC > CP009273/1586818‑1586952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |