| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1948765 | NA (NA) | 11 (0.030) | 6/98 | NT | NA | noncoding (80/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1948776 | NA (NA) | noncoding (91/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 798 total aligned reads displayed.
GTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACG > CP009273/1948698‑1948832 | gAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATa < 1:5276238/67‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAg < 1:32426266/67‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGc < 1:3523527/68‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGc < 1:3498719/68‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGc < 1:36079576/68‑1 (MQ=255) aTCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAgcgc < 1:17827144/68‑1 (MQ=255) tCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCa < 1:19469313‑M2/68‑2 (MQ=255) tCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCa < 1:36919957‑M2/68‑2 (MQ=255) ccGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCa < 1:18002450‑M2/67‑2 (MQ=255) ccGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCa < 1:3131442‑M2/67‑2 (MQ=255) cGGCCTACAAAACGTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCatc < 1:23063140‑M2/68‑4 (MQ=255) gCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCatcag < 1:13437845‑M2/68‑6 (MQ=255) ccTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCatcag > 1:12327564‑M2/1‑62 (MQ=255) cTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCatcaggc > 1:23673109‑M2/1‑61 (MQ=255) aCAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAg < 1:12544219/68‑1 (MQ=255) cAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGc < 1:26305683/68‑1 (MQ=255) cAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGc < 1:14600007/68‑1 (MQ=255) cAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGc < 1:32253310/68‑1 (MQ=255) aaaCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCtt > 1:11442655/1‑68 (MQ=255) aCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATgcgctatgcttatcagggcttcata > 1:24373706‑M1/1‑43 (MQ=255) aCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCttt > 1:25864131/1‑67 (MQ=255) aCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCttt > 1:19851545/1‑67 (MQ=255) aCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCttt > 1:23376450/1‑67 (MQ=255) ccTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTAc < 1:26698350/68‑1 (MQ=255) cTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACg < 1:16331955/68‑1 (MQ=255) cTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACg > 1:15552543/1‑68 (MQ=255) cTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACg < 1:31564807/68‑1 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg < 1:28868919/67‑1 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg < 1:22703390/67‑1 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg < 1:17081476/67‑1 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGc > 1:3434281/1‑68 (MQ=255) aaTTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCa < 1:10736475/68‑1 (MQ=255) aaTTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCa < 1:25753166/68‑1 (MQ=255) ttCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATa > 1:38597121/1‑68 (MQ=255) cAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATaa > 1:5570913/1‑67 (MQ=255) atatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCa > 1:10051412/1‑68 (MQ=255) atatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCa > 1:4404269/1‑68 (MQ=255) atatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCa > 1:11709620/1‑68 (MQ=255) atatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCa > 1:29642846/1‑68 (MQ=255) tGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgcgc < 1:24785650/68‑1 (MQ=255) gCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgcgc > 1:298677/1‑67 (MQ=255) gCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgcgc > 1:24131799/1‑67 (MQ=255) gCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgcgc > 1:16588289/1‑67 (MQ=255) gCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgcgc > 1:7664684/1‑67 (MQ=255) gCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgcgc > 1:33822045/1‑67 (MQ=255) aGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCg > 1:20131161/1‑68 (MQ=255) aGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCg > 1:26916378/1‑68 (MQ=255) aGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCg > 1:37286796/1‑68 (MQ=255) aGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCg > 1:14094130/1‑68 (MQ=255) aGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCg > 1:7998988/1‑68 (MQ=255) aGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCg > 1:33060552/1‑68 (MQ=255) gggACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGt > 1:21578352/1‑68 (MQ=255) gggACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGt > 1:18495137/1‑68 (MQ=255) gACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt < 1:29313751/67‑1 (MQ=255) gACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt > 1:6888678/1‑67 (MQ=255) gACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt < 1:11111572/67‑1 (MQ=255) gACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt > 1:23995645/1‑67 (MQ=255) gACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt > 1:39607996/1‑67 (MQ=255) aCTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGttt > 1:3023969/1‑67 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc < 1:3772539/68‑1 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:35624818/1‑68 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc < 1:39131688/68‑1 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc < 1:34639649/68‑1 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTACGGgc > 1:7240076/1‑68 (MQ=255) tAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:1517830/1‑67 (MQ=255) tAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:21884172/1‑67 (MQ=255) tAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:2544927/1‑67 (MQ=255) tAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:38222324/1‑67 (MQ=255) ggCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCt > 1:20872138/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTa < 1:28271772/67‑1 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:4844414/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:873769/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:9644834/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:37053324/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:606200/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:19063664/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:10452630/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:11993277/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:12877766/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:13733594/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:1819080/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:18816718/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:33605337/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:20431696/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:22286961/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:27989671/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:30887703/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:31934832/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:33227075/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCCCCCGTTTCCGGGCGCTAt > 1:32674284/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCAAAACATCAGCGCCCGTTTCCGGGCGCTAt > 1:6463215/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACG‑TTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt < 1:8124602/67‑1 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTAACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:9162480/1‑68 (MQ=255) cTGATgcgctatgcttatcaggcctacatagtccctgcaatatattgaattagcaaggttttgtagg > 1:24618130‑M1/1‑5 (MQ=255) gATgcgctatgcttatcaggcctacatagtccctgcaatatattgaattagcaaggttttgtaggccg < 1:14945401‑M1/68‑66 (MQ=255) tgcgctatgcttatcaggcctacatagtccctgcaatatattgaattagcaaggttttgtaggccgga < 1:21313308‑M1/68‑68 (MQ=255) tgcgctatgcttatcaggcctacatagtccctgcaatatattgaattagcaaggttttgtaggccgga < 1:15975857‑M1/68‑68 (MQ=255) tgcgctatgcttatcaggcctacatagtccctgcaatatattgaattagcaaggttttgtaggccgga < 1:36395631‑M1/68‑68 (MQ=255) tAAGCATAGCGCatcacgcctacatagtccctgcaatatattgaattagcaaggttttgtaggccgga > 1:17470931‑M2/1‑12 (MQ=255) tAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGACCGTAACCCCGCGCTATTCACg > 1:27463106/1‑68 (MQ=25) | GTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACG > CP009273/1948698‑1948832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |