| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2145164 | NA (NA) | 4 (0.010) | 4/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 399 total aligned reads displayed.
GACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCA > CP009273/2145098‑2145231 | gaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAttgt < 1:31468209/68‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:20869994/67‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:6695939/67‑1 (MQ=255) agagCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCt < 1:31974926‑M2/67‑2 (MQ=255) gagCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttc < 1:25904327‑M2/68‑4 (MQ=255) gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttca < 1:22625866‑M2/67‑5 (MQ=255) gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttca > 1:34331631‑M2/1‑63 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:25514733‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:18571880‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:3234707‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:3740714‑M2/1‑59 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:6095666‑M2/68‑11 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:24997682‑M2/68‑11 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc > 1:18474167‑M2/1‑58 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:24370754‑M2/68‑11 (MQ=255) tAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCAt < 1:30787679/68‑1 (MQ=255) ttCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgag > 1:14970641/1‑68 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgaga < 1:29169725/68‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:31143770/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:33609031/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:18137863/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:24621178/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:12069016/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:2626037/66‑1 (MQ=255) tCGCTAATCAGCCGTTATACTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:26566284/66‑1 (MQ=255) tCGCTAATCAGCCGGTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:1740186/66‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:28793854/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:5971845/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:38889591/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:38717876/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGGTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:21474218/68‑1 (MQ=255) aaTCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactc > 1:14638535/1‑68 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac < 1:19105386/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac < 1:15514980/68‑1 (MQ=255) gCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac > 1:2999624/1‑65 (MQ=255) gCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac > 1:14369856/1‑65 (MQ=255) gCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac > 1:22232886/1‑65 (MQ=255) gCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac > 1:19791560/1‑65 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcactc < 1:35932012/65‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg > 1:2345306/1‑67 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg < 1:4254221/67‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:34613179/68‑1 (MQ=255) gTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGcc < 1:10163587/68‑1 (MQ=255) tataTTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGccc < 1:23006381/67‑1 (MQ=255) tataTTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCca < 1:6412419/68‑1 (MQ=255) tatttattGTTTAAACTGGCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacg > 1:18959559‑M1/1‑27 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAATCTCACTCTGCCcaca > 1:8974757/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:21940997/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca < 1:12315509/68‑1 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:30522069/1‑67 (MQ=255) tttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc < 1:10906635/68‑1 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:16961996/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:37918001/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:17841184/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:4629764/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:19448694/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:22750303/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:760883/1‑67 (MQ=255) tattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcg > 1:13794883/1‑67 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:37126032/1‑68 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:8427077/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg > 1:25796002/1‑55 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACGGCGCCAg > 1:3760301/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg < 1:8801868/68‑1 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:34483354/1‑68 (MQ=255) gTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt < 1:5338226/68‑1 (MQ=255) gTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt > 1:5723304/1‑68 (MQ=255) gTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt > 1:10450479/1‑68 (MQ=255) gTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt < 1:21112174/68‑1 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTg < 1:11405368/67‑1 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTg < 1:33093135/67‑1 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTg > 1:20069260/1‑67 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTg < 1:1343394/67‑1 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGc < 1:807079/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:27452380/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:7172011/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:4100137/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:8492592/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:10044414/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:15966899/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:23916560/1‑68 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCTCTCTGCCCACAGCGCCAGTGCCAACGt < 1:39174538/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:32880542/68‑1 (MQ=255) ggCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaat < 1:15217336‑M1/68‑59 (MQ=255) ggCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaat < 1:11757143‑M1/68‑59 (MQ=255) ggCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 1:28492308/68‑1 (MQ=255) ggCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 1:586759/68‑1 (MQ=255) gCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaatt > 1:36922970‑M1/1‑9 (MQ=255) gCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaatt > 1:35336315‑M1/1‑9 (MQ=255) cGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaattt > 1:34983028‑M1/1‑8 (MQ=255) ggTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtttt < 1:33966428/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:3827931/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:29888254/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:32169961/67‑1 (MQ=255) tGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgct < 1:31329304‑M1/68‑65 (MQ=255) tGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgct < 1:2643660‑M1/68‑65 (MQ=255) tGAATTGTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgc > 1:16080254‑M2/1‑12 (MQ=255) gAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgctc < 1:38528009‑M1/68‑66 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca < 1:1714216/68‑1 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca < 1:28145835/68‑1 (MQ=255) | GACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCA > CP009273/2145098‑2145231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |