| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2691481 | 377 (0.790) | 31 (0.070) | 13/100 | NT | 8.0% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 376 (0.890) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
Only 100 of 680 total aligned reads displayed.
CGACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGA > CP009273/2691414‑2691547 | gACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctgg < 1:17395007/68‑1 (MQ=255) gACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctgg < 1:39255021/68‑1 (MQ=255) gACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctgg > 1:7903461/1‑68 (MQ=255) gACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTG > 1:19125953‑M1/1‑67 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctggc < 1:22612772/67‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:29024897/68‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:32264/68‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:24695095/68‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:15968196/68‑1 (MQ=255) tCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAg < 1:29712621/68‑1 (MQ=255) tCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAg < 1:10797916/68‑1 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa < 1:38029137/68‑1 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:25110594/1‑68 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:8703089/1‑68 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:8362046/1‑68 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:315293/1‑68 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:6348338/1‑68 (MQ=255) tCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTa > 1:15717272/1‑67 (MQ=255) cccAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAAc < 1:33463687/68‑1 (MQ=255) acgaCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:26367177/4‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCCCGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:22038060/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:22868326/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:11115215/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:16400172/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:4764290/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:26002861/1‑68 (MQ=255) cAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgc < 1:20088189/66‑1 (MQ=255) aCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGca > 1:18716924‑M2/1‑66 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:23999276‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:34177783‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:34511082‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:1789133‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:1154737‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:33110637‑M2/1‑65 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagc > 1:36958056‑M2/1‑64 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag < 1:37351717‑M2/67‑4 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag < 1:33177848‑M2/67‑4 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag < 1:23399195‑M2/67‑4 (MQ=255) cATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagcc < 1:37715690‑M2/68‑6 (MQ=255) tCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaa > 1:10478415‑M1/1‑41 (MQ=255) gTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaat > 1:8437135‑M2/1‑59 (MQ=255) tCAATACCCAACCACCATAGCCACGCTGAATTTTGCTTgcgcggggtaatcttatcgccagccaaatt > 1:21623491‑M1/1‑38 (MQ=255) tACCCAACCACCATAGCCCCGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagc > 1:16970768‑M2/1‑54 (MQ=255) aCCCCACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATc > 1:9507478/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGccgcgggttaatcttatcgcccgccaaattcagggg > 1:15049295‑M1/1‑32 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgt > 1:12060401‑M1/1‑32 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:18484805/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:27931192/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGAAGCCAGGGCGTATCg > 1:25443934/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCAGCGGCAGCCAGGGCGTATCg > 1:3168180/1‑68 (MQ=255) ccAACCACCATAGCCTCGGTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGTCGTATCGa < 1:5122523/68‑1 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtg > 1:13854628‑M2/1‑51 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:21120953/68‑1 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa > 1:36200181/1‑68 (MQ=255) accaccATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAAt > 1:32938408/1‑68 (MQ=255) ccaccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATa > 1:35406885/1‑68 (MQ=255) caccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:20577887/1‑68 (MQ=255) accaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggctatg > 1:10278307‑M2/1‑45 (MQ=255) accaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:596052/1‑67 (MQ=255) accaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:19531130/1‑67 (MQ=255) aTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAAcc > 1:14118974/1‑67 (MQ=255) tAGCCACGCTGAATTTGGCTGGCGATAAGATTACCCCGCGGCAGCCAGGGCGTATCGAAATAAACCGc < 1:38348142/68‑1 (MQ=255) tAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGc < 1:5640968/68‑1 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:17932057/1‑68 (MQ=255) gCCACGCTGAATTTGGCTGccgcgggtttatcttatcgccagccaaattcagcgtggctatggtggtt > 1:18050693‑M1/1‑19 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:14587947/1‑67 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:35055238/1‑67 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:27273858/1‑68 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:23624430/1‑68 (MQ=255) cACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgg > 1:27022810‑M1/1‑17 (MQ=255) cACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgtggcgatggtggttgg > 1:31060517‑M1/1‑17 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:6970449/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:22398247/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:4008167/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:27596432/1‑68 (MQ=255) cTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCa > 1:666974/1‑68 (MQ=255) aTTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgac > 1:4565814‑M1/1‑9 (MQ=255) aTTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCg < 1:18206002/67‑1 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCg > 1:23910644/1‑66 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:16801138/68‑1 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:743354/68‑1 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:34428503/68‑1 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:30225017/68‑1 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:28151614/68‑1 (MQ=255) ggctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGc < 1:35968083/68‑1 (MQ=255) gctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCg > 1:37472075/1‑68 (MQ=255) gCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc > 1:13030052‑M1/1‑4 (MQ=255) cTGccgcgggttaatcttatggccagccaaattgagcgtggctatggtggttgggtattgacgatgcg > 1:28564976‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:10058715‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:9136340‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:13228462‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:32020599‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:33974272‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:24278597‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc < 1:12377067‑M1/67‑65 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc < 1:11405363‑M1/67‑65 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggcgatggtggttgggtattgacgatgcg > 1:29350683‑M1/1‑3 (MQ=255) cTGcagcgggttaatcttttcggcagccaaattcagggtggctatggtggttgggtattgacgatgc < 1:15327792‑M1/67‑65 (MQ=255) tGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcgt > 1:38751612‑M1/1‑2 (MQ=255) tGccgcgggttaatcttatcgacagccaaattcagcgtggctatggtggttgggtattgacgatgcgt > 1:12636991‑M1/1‑2 (MQ=255) | CGACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGA > CP009273/2691414‑2691547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |