| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 320 (0.670) | 20 (0.050) | 12/92 | NT | 5.6% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 410 (1.050) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
Only 100 of 665 total aligned reads displayed.
TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTG > CP009273/213‑345 | tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:9428438‑M2/1‑66 (MQ=255)tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:36286398‑M2/1‑66 (MQ=255)tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:37329452‑M2/1‑66 (MQ=255)tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:14773502‑M2/1‑66 (MQ=255)tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa < 1:38685220‑M2/67‑2 (MQ=255) accaccaccATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc > 1:2456873‑M2/1‑65 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcc > 1:26225061‑M2/1‑64 (MQ=255) ccccaccatcACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:36683072‑M2/66‑6 (MQ=255) caccacctTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:33221669‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:26004547‑M2/68‑6 (MQ=255) ccaccaTCACCATTACCCCAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:23287776‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:10054002‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:28783773‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:30525410‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:19364159‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:30899895‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:8856300‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:10514790‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:1721606‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:6913074‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:4832493‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:15218179‑M2/1‑61 (MQ=255) cacaatcaccatATCCACAGGTAACGGTGCGGGCTGACGCGTACAGCAAACACAGAAAAAcgcccgca > 1:19197224‑M2/1‑60 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac > 1:2691634‑M2/1‑59 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:36031599‑M2/67‑9 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:26537353‑M2/67‑9 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:37498087‑M2/67‑9 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:3813524‑M2/67‑9 (MQ=255) ccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcacc > 1:3956545‑M2/1‑58 (MQ=255) catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCt < 1:11506466/68‑1 (MQ=255) accatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACa > 1:29709164/1‑68 (MQ=255) accatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACa > 1:22981948/1‑68 (MQ=255) accatTACCACAGGTAACGGTGCGGGCGGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACa > 1:8537648/1‑68 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg > 1:35640951/1‑68 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg > 1:24101968/1‑68 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt > 1:31225296/1‑68 (MQ=255) ttACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGc > 1:9796541/1‑68 (MQ=255) accaccGGCAACCGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAcgcccgcaccgttacctgtgg > 1:32083073‑M2/1‑47 (MQ=255) aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:25130527/1‑68 (MQ=255) aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACACTGCgg > 1:236144/1‑68 (MQ=255) ccACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggt > 1:21040041‑M2/1‑46 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCTCACCTGCCAGTGCgg > 1:18596264/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGa > 1:31434614/1‑58 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:31940284/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:8171299/1‑66 (MQ=255) aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttt > 1:27803341/1‑68 (MQ=255) aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttt > 1:36855795/1‑68 (MQ=255) aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttt > 1:13783810/1‑68 (MQ=255) ggTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttt > 1:21715505/1‑68 (MQ=255) ggTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttt > 1:2129685/1‑68 (MQ=255) ggTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttt > 1:6165063/1‑68 (MQ=255) gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttttt > 1:14439411/1‑68 (MQ=255) tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggtaatgg > 1:4366218‑M2/1‑39 (MQ=255) tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttt > 1:20562557/1‑68 (MQ=255) aaCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttttttt > 1:39207080/1‑68 (MQ=255) aCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttttt > 1:25486057/1‑68 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttttt > 1:8387969/1‑67 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACATGACAGTGCGGGC‑tttttttt > 1:11896348/1‑67 (MQ=255) cGGTGAGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttttttat > 1:19018012/1‑65 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTc > 1:3298763/1‑68 (MQ=255) gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCTCCTGACATTGCGGGC‑TTTTTTTTTc > 1:12770111/1‑67 (MQ=255) gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCg > 1:22669163/1‑68 (MQ=255) tGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCg > 1:2798943/1‑67 (MQ=255) ggCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaa > 1:13468862/1‑68 (MQ=255) gCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaaa > 1:17552325/1‑68 (MQ=255) gCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaaa > 1:10887510/1‑68 (MQ=255) gCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaaa > 1:18357468/1‑68 (MQ=255) gCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaaa > 1:19935458/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCCCCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAg > 1:30330353/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGGCCAAAg > 1:22101266/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaaa < 1:32412574/67‑1 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAg > 1:5262832/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAg > 1:4154565/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAg > 1:15441869/1‑68 (MQ=255) gcgTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAAc > 1:6525536/1‑68 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg < 1:22419187/68‑1 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg < 1:9276315/68‑1 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg < 1:27425877/68‑1 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg > 1:2918943/1‑68 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg < 1:35003052/68‑1 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg > 1:32580115/1‑68 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg > 1:33667487/1‑68 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAg < 1:16102955/67‑1 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAg < 1:30048053/67‑1 (MQ=255) gAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaa > 1:7738668/1‑67 (MQ=255) aaaCACAGAAAAAAGCCCTCACCTGACTGTGCTGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaac < 1:12228696/67‑1 (MQ=255) aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca > 1:17979293/1‑68 (MQ=255) aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTa < 1:19652184/65‑1 (MQ=255) aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑‑TTTTTTTTCGACCAAAGGTAACGAGGTaaca > 1:16690195/1‑67 (MQ=255) aaaCAAAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca > 1:24824478/1‑68 (MQ=255) aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaacaa < 1:34407668/68‑1 (MQ=255) aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaacaa < 1:348153/68‑1 (MQ=255) acacATAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTTCGACCAAAGGTAACGAGGTaacaa < 1:5773265/68‑1 (MQ=38) cacaGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc < 1:7475603/68‑1 (MQ=255) cacaGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc > 1:37082513/1‑68 (MQ=255) cacaGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc > 1:1410715/1‑68 (MQ=255) caGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCAt > 1:28569292/1‑68 (MQ=255) caGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCAt > 1:12465691/1‑68 (MQ=255) aaaaaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCAt < 1:38922513/64‑1 (MQ=255) aaaaaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGa > 1:18696526/1‑68 (MQ=255) | TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTG > CP009273/213‑345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |