| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 902734 | 202 (0.430) | 14 (0.030) | 7/98 | NT | 7.0% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | CP009273 | = 902785 | 197 (0.470) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
Only 100 of 274 total aligned reads displayed.
AGCAGCAAGGCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCCTCT > CP009273/902719‑902851 | agcagcAAGGCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTc < 1:9022168‑M2/68‑2 (MQ=255)agcagcAAGGCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTc < 1:7547584‑M2/68‑2 (MQ=255)agcagcAAGGCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTc < 1:34606509‑M2/68‑2 (MQ=255) gcagcaAGGCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTc < 1:3013666‑M2/67‑2 (MQ=255) gcagcaAGGCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTc < 1:10894378‑M2/67‑2 (MQ=255) gcagcaAGGCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTc < 1:15913083‑M2/67‑2 (MQ=255) gcagcaAGGCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTc < 1:27341595‑M2/67‑2 (MQ=255) gcagcaAGGCTGGCGGACGTGTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTc < 1:29858712‑M2/67‑2 (MQ=255) gCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCgg > 1:7113149/1‑67 (MQ=255) tGGCGGACGTTTTAACGGTAAACCCGGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGc < 1:24329606/67‑1 (MQ=255) tGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGc < 1:21996457/67‑1 (MQ=255) tGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGc < 1:4498344/67‑1 (MQ=255) cGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAg > 1:14077318/1‑68 (MQ=255) ggACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTcgccagccttgctgc > 1:27578780‑M2/1‑52 (MQ=255) ggACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAgg < 1:22270462/68‑1 (MQ=255) ggACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAgg < 1:8912899/68‑1 (MQ=255) ggACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAgg < 1:291760/68‑1 (MQ=255) ggACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAgg < 1:4260032/68‑1 (MQ=255) ggACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAg < 1:22569470/67‑1 (MQ=255) ggACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAg > 1:37824137/1‑67 (MQ=255) gACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAgg > 1:20524732/1‑67 (MQ=255) cGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGcc < 1:28115134/67‑1 (MQ=255) gTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCt > 1:39304102/1‑67 (MQ=255) tttAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTcgccagccttgctgctttatgg > 1:10152135‑M2/1‑46 (MQ=255) tttAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGGcgccagccttgctgctttatgg > 1:18124132‑M2/1‑46 (MQ=255) aaCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgt < 1:25580045/68‑1 (MQ=255) aaCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgt < 1:1948691/68‑1 (MQ=255) aaCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgt < 1:7529465/68‑1 (MQ=255) aaCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgt < 1:12832522/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:5282865/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:30713734/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:9417982/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:32202946/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:11210138/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:27528816/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:5834559/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:39382436/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:22489200/68‑1 (MQ=255) aCGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtc < 1:38078484/68‑1 (MQ=255) cGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtcg > 1:27863109/1‑68 (MQ=255) ggTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtcgt > 1:16300290/1‑68 (MQ=255) ggTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtcgt > 1:3284623/1‑68 (MQ=255) ggTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGcgtcgt > 1:37614150/1‑68 (MQ=255) gTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTa > 1:1002847/1‑68 (MQ=255) aaaCCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGc < 1:19187374/68‑1 (MQ=255) aaaCCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGc < 1:16898921/68‑1 (MQ=255) aaaCCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGc < 1:3926925/68‑1 (MQ=255) aaCCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTcgccagccttgctgctttatggcaggtagtga > 1:35892557‑M2/1‑36 (MQ=255) cccccgCCTGTTTGGCACAATCCCCGTACTCCGCGcgccagccttgctgctttatggcaggtagtgaa > 1:38992242‑M2/2‑35 (MQ=255) cccGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCa > 1:15469477/1‑68 (MQ=255) cccccTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAACGCCTGAGCGTCGTAGCCCCAg < 1:25225379/65‑1 (MQ=255) ccGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAg < 1:26400648/68‑1 (MQ=255) gCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTc < 1:21470645/68‑1 (MQ=255) gCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTc < 1:19266535/68‑1 (MQ=255) gCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTc < 1:32312826/68‑1 (MQ=255) gCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTc < 1:10783792/68‑1 (MQ=255) cTGTTTGGCAAAATACCCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCg < 1:28806324/67‑1 (MQ=255) cTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCg < 1:31616944/67‑1 (MQ=255) cTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCg < 1:21050672/67‑1 (MQ=255) cTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCg < 1:14763453/67‑1 (MQ=255) cTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCg < 1:6649532/67‑1 (MQ=255) ttGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTgg < 1:32666317/67‑1 (MQ=255) gtGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGa < 1:35407778/67‑1 (MQ=255) atGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGGCGTAGCCCCAGTCGCTGGa < 1:31935717/67‑1 (MQ=255) gCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGtt > 1:12676699/1‑68 (MQ=255) ccaAAATAACCGCACCCCGGGcgccagccttgctgctttatggcaggtagtgaaccaaatcggcggta > 1:15731104‑M2/2‑21 (MQ=255) aTAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCa < 1:17244686/68‑1 (MQ=255) tAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAg < 1:36328544/68‑1 (MQ=255) aaCCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGt < 1:36973660/68‑1 (MQ=255) aaCCGCCCTCCGGCcgccagccttgctgctttatggcaggtagtgaaccaaatcggcggtaaagagcg > 1:34912891‑M2/1‑14 (MQ=255) aCCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGtt < 1:14389626/68‑1 (MQ=255) aCCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGtt < 1:25897040/68‑1 (MQ=255) aCCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGtt < 1:18875010/68‑1 (MQ=255) ccGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGttt < 1:2942291/68‑1 (MQ=255) cGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGtttt > 1:3255815/1‑68 (MQ=255) cGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGtttt > 1:16734310/1‑68 (MQ=255) cGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGtttt > 1:36206846/1‑68 (MQ=255) gTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGttttt < 1:17871655/68‑1 (MQ=255) gTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGttttt < 1:20855507/68‑1 (MQ=255) gTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGtttt > 1:23370497/1‑67 (MQ=255) aCTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGttttt > 1:12015457/1‑66 (MQ=255) tCCGGTCGCGAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGATGACCAGTTTTtcctc < 1:15224686/68‑1 (MQ=255) tCCGGTCGCCAGCGGGCAAAGGCCTGGGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTGTTtgct > 1:6450716/1‑67 (MQ=255) tCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTtcct > 1:11362693/1‑67 (MQ=255) tCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTtcct > 1:34760655/1‑67 (MQ=255) tCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTtcct > 1:29588154/1‑67 (MQ=255) tCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTtcct > 1:21763436/1‑67 (MQ=255) tCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTtcct > 1:33255302/1‑67 (MQ=255) cGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTcctcct < 1:8276858/68‑1 (MQ=255) ggTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCctcctc < 1:24957638/68‑1 (MQ=255) ggTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCctcctc < 1:1180015/68‑1 (MQ=255) ggTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCctcctc < 1:33769828/68‑1 (MQ=255) tCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCctct < 1:33576876/67‑1 (MQ=255) tCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCctct < 1:6244143/67‑1 (MQ=255) tCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCctct < 1:35648141/67‑1 (MQ=255) tCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCctct < 1:8609564/67‑1 (MQ=255) tCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCctct < 1:4746709/67‑1 (MQ=255) tCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCctct < 1:16131002/67‑1 (MQ=255) tCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCctct < 1:10516001/67‑1 (MQ=255) tCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCctct < 1:976822/67‑1 (MQ=255) | AGCAGCAAGGCTGGCGGACGTTTTAACGGTAAACCCCGCCTGTTTGGCAAAATAACCGTACTCCGGTCGCCAGCGGGCAAAGGCCTGAGCGTCGTAGCCCCAGTCGCTGGAGTTGACCAGTTTTTCCTCCTCT > CP009273/902719‑902851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |