| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1187529 = | 157 (0.330) | 9 (0.020) | 4/96 | NT | 5.6% | coding (559/642 nt) | hflD | putative lysogenization regulator |
| ? | CP009273 | 1187561 = | 168 (0.410) | coding (527/642 nt) | hflD | putative lysogenization regulator | |||||
Only 100 of 357 total aligned reads displayed.
CAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTACAGCAGGGG > CP009273/1187494‑1187627 | aGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGcgcg > 1:4335813/1‑68 (MQ=255) ggCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGa > 1:32185124/1‑68 (MQ=255) ggCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGa > 1:26136740/1‑68 (MQ=255) ggCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGa > 1:34925997/1‑68 (MQ=255) cGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAAt > 1:7678016/1‑68 (MQ=255) gATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAAt < 1:19566536/67‑1 (MQ=255) aCGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGGCAGAGCACGGCGGCGCGAAtgcct > 1:21328004/1‑67 (MQ=255) aCGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAAtgcct > 1:35721482/1‑67 (MQ=255) agaAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCca > 1:27658559/1‑68 (MQ=255) gaAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCca < 1:1997970/67‑1 (MQ=255) gaAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCca < 1:15152802/67‑1 (MQ=255) gaAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCca < 1:38183037/67‑1 (MQ=255) gaAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCca < 1:7459484/67‑1 (MQ=255) gaAAACATCAGGTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCca < 1:27875194/67‑1 (MQ=255) tCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGtt > 1:13415837/1‑68 (MQ=255) tggcaggcattcgCGCCGCCGCCCTGGTGGCAGCGCACGGCGGCGCGAATGCCGGCCAGCAGGGGTgc < 1:37329329‑M1/55‑1 (MQ=255) gTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTgc > 1:9275635/1‑67 (MQ=255) tGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGcgcg > 1:20218819/1‑68 (MQ=255) tGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGcgcg > 1:28182681/1‑68 (MQ=255) tGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGcgcg > 1:24040163/1‑68 (MQ=255) ggcattcgCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGa < 1:37172149‑M1/59‑1 (MQ=255) aCGTCCGCCGCCGCCCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACtt > 1:12976598/1‑68 (MQ=255) aCGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACtt > 1:20587005/1‑68 (MQ=255) aCGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACtt > 1:34345030/1‑68 (MQ=255) aCGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACtt > 1:26964801/1‑68 (MQ=255) aCGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACtt > 1:31637830/1‑68 (MQ=255) aCGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACtt > 1:7927036/1‑68 (MQ=255) aCGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCA‑GGTTGCGCGAACtt > 1:15624072/1‑67 (MQ=255) cGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAAc < 1:15891178/65‑1 (MQ=255) cGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAAc < 1:30510334/65‑1 (MQ=255) cGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAAc < 1:3592940/65‑1 (MQ=255) cGTCCGCCGCCGACCTGGAGACAGAGCCCGGCGGCGCGAAAGCCTGGCAGCAGGGTTCCGCGAACtt > 1:14200423/1‑67 (MQ=255) tCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTc > 1:5732876/1‑67 (MQ=255) ccgccgccgACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCg < 1:38684555/67‑1 (MQ=255) ccgccgccgACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACATTCg < 1:20330514/67‑1 (MQ=255) gccgccgtgctctggcaccaggtcggcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCt < 1:1680402‑M2/37‑1 (MQ=255) GCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCg < 1:3965111‑M1/65‑1 (MQ=255) GCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCg < 1:36855094‑M1/65‑1 (MQ=255) GCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCt > 1:38981926‑M1/1‑68 (MQ=255) GCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCt > 1:10060780‑M1/1‑68 (MQ=255) GCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCt > 1:7037749‑M1/1‑68 (MQ=255) CGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACt > 1:513505‑M1/1‑68 (MQ=255) CGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACt > 1:13817973‑M1/1‑68 (MQ=255) CGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACt > 1:1760452‑M1/1‑68 (MQ=255) CGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACt > 1:17938451‑M1/1‑68 (MQ=255) CGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACt > 1:24919354‑M1/1‑68 (MQ=255) CGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGGTGCGCGAACTTTCGCCTGCACt > 1:23386224‑M1/1‑68 (MQ=255) CGACCTGGGGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACt > 1:32413053‑M1/1‑68 (MQ=255) tGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTgg < 1:11591076/68‑1 (MQ=255) tGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGc < 1:18524898/67‑1 (MQ=255) tGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGc < 1:35312654/67‑1 (MQ=255) gCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCtt > 1:36471675/1‑68 (MQ=255) ccAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt > 1:10552814/1‑68 (MQ=255) ccAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt > 1:28276184/1‑68 (MQ=255) gagagCACGGCGGCGCGAATGCCTGCAAGCAGGGTTGCGCGTACTTTCGCCTGCACTTGTGGGCttt < 1:38455790/66‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:34445196/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:5405077/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:6330460/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:646411/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:8556722/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:9472563/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:28044874/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:23484313/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt > 1:14395266/1‑67 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:32086950/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:25873561/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:26738050/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:27233208/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:29101451/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:30227605/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:14892076/67‑1 (MQ=255) cAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCttt < 1:18346351/67‑1 (MQ=255) agCACGGCGGCGCGAATGCCTGCCCGCAGGGTTGCGCGCACTTTCGCCTGCACTGGTGGGCTTTGCAg > 1:25798801/1‑68 (MQ=255) agCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAg > 1:21710829/1‑68 (MQ=255) agCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAg > 1:7765781/1‑68 (MQ=255) agCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAg > 1:11865061/1‑68 (MQ=255) agCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAg > 1:8324741/1‑68 (MQ=255) agCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAg > 1:16524861/1‑68 (MQ=255) gCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCa < 1:29667897/66‑1 (MQ=255) gCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCa < 1:22208352/66‑1 (MQ=255) gCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCa < 1:12242370/66‑1 (MQ=255) gCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCa < 1:33496611/66‑1 (MQ=255) gCACGGCGGCGCGAAAGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCa < 1:4173851/66‑1 (MQ=255) aCGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGt < 1:21103990/66‑1 (MQ=255) aCGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGt < 1:31812084/66‑1 (MQ=255) aCGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAc < 1:28755720/68‑1 (MQ=255) aCGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAc > 1:29330723/1‑68 (MQ=255) aCGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAc > 1:29941717/1‑68 (MQ=255) cggcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAca < 1:32759678‑M2/60‑1 (MQ=255) gcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCGTGCACTTGTGGGCTTTGCAGTAcagc > 1:31226043‑M2/7‑68 (MQ=255) gcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCAGTTGTGGGCTTTGCAGTAcagc > 1:37813802‑M2/7‑68 (MQ=255) gcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAcagc > 1:2439327‑M2/7‑68 (MQ=255) gcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAcagc > 1:6646513‑M2/7‑68 (MQ=255) gcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAcagc > 1:19302915‑M2/7‑68 (MQ=255) gcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAcagc > 1:22832643‑M2/7‑68 (MQ=255) gcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAcagc > 1:25208851‑M2/7‑68 (MQ=255) gcggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGGAcagc > 1:39133983‑M2/7‑68 (MQ=255) ggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAcagcag > 1:23798005‑M2/5‑68 (MQ=255) ggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAcagcag > 1:34082992‑M2/5‑68 (MQ=255) ggcgCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTAcagca < 1:11365126‑M2/63‑1 (MQ=255) | CAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGCGAATGCCTGCCAGCAGGGTTGCGCGAACTTTCGCCTGCACTTGTGGGCTTTGCAGTACAGCAGGGG > CP009273/1187494‑1187627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |