| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1203261 | 257 (0.540) | 83 (0.240) | 30/80 | NT | 36.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 102 (0.300) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
Only 100 of 295 total aligned reads displayed.
ATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA > CP009273/1204991‑1205125 | tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:34296102‑M2/1‑67 (MQ=255) tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:11542719‑M2/1‑67 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct < 1:13306099‑M2/68‑4 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct < 1:394469‑M2/68‑4 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct < 1:3672110‑M2/68‑4 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct < 1:25013660‑M2/68‑4 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct < 1:31475412‑M2/68‑4 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 1:27694953‑M2/67‑7 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 1:17068130‑M2/67‑7 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 1:37425568‑M2/67‑7 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:6679025‑M2/1‑60 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:17989447‑M2/1‑60 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:38738266‑M2/1‑60 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct > 1:32609272‑M2/1‑60 (MQ=255) tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa < 1:21930464‑M2/67‑13 (MQ=255) tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaa < 1:22791953‑M2/68‑17 (MQ=255) ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAc < 1:588910/68‑1 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt > 1:32652485/1‑68 (MQ=255) ggAGTGTCTGAAGGCCTCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggt > 1:25555508‑M2/1‑48 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGtt > 1:23480987/1‑68 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt < 1:31593503‑M2/68‑22 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCCACGttt > 1:24115395/1‑68 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt > 1:28266543/1‑68 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt > 1:34361617/1‑68 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt < 1:35737526‑M2/67‑22 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcg < 1:25866337‑M2/68‑25 (MQ=255) ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATg < 1:37654408/67‑1 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga < 1:33093619‑M2/67‑28 (MQ=255) gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt < 1:19634365/68‑1 (MQ=255) aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:24761985‑M2/1‑37 (MQ=255) aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:16738332‑M2/1‑37 (MQ=255) aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:2922570‑M2/1‑37 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa > 1:10550656/1‑68 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa > 1:36891302/1‑68 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:33901186‑M2/68‑34 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:38357774‑M2/68‑34 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:30547741‑M2/68‑34 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac < 1:29731652‑M2/68‑39 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATa < 1:1257205/68‑1 (MQ=255) aCCGGGACACCTACAGGTAATGCAGAGCCTTCTCCCAAACCAAAGTTTAAGAAAATGAAGAAATAACa > 1:2447147/1‑68 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:21085808‑M2/1‑27 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:10014973‑M2/1‑27 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt < 1:4549656‑M2/68‑42 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:25141178‑M2/1‑27 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:382166‑M2/1‑27 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:18020312‑M2/1‑27 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:21636341‑M2/1‑27 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa < 1:546218/68‑1 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa < 1:26907700/68‑1 (MQ=255) aCCGGCACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttcgcacagt > 1:28653538‑M2/1‑27 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcc < 1:28802311‑M2/68‑45 (MQ=255) gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGc < 1:17762568/68‑1 (MQ=255) gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcca < 1:6739066‑M2/67‑46 (MQ=255) gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcca < 1:33618940‑M2/67‑46 (MQ=255) gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaa > 1:14989952/1‑68 (MQ=255) acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:27165873/1‑68 (MQ=255) cacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:25762828‑M2/1‑20 (MQ=255) cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa < 1:4146661/67‑1 (MQ=255) acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg > 1:17185572/1‑68 (MQ=255) ccAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccga > 1:14330192‑M2/1‑18 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGc < 1:23942795/68‑1 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt < 1:13004242‑M2/68‑53 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:11237678/1‑68 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca < 1:14132688/68‑1 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:16204913/1‑68 (MQ=255) aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:36429802/1‑67 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:35491142/1‑68 (MQ=255) ggTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgat < 1:173331‑M2/68‑57 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgata < 1:5081153‑M2/68‑58 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:7648097/1‑67 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:34817433/1‑67 (MQ=255) tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga > 1:24908814‑M2/1‑10 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 1:9298036/66‑1 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 1:26016417/66‑1 (MQ=255) aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc < 1:26694647‑M2/68‑60 (MQ=255) tGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg < 1:31053473‑M2/67‑61 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:29993821/1‑67 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:14293109/1‑67 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg < 1:15581651/68‑1 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc < 1:37190273‑M2/68‑63 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc < 1:15869820‑M2/68‑63 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc < 1:8452553‑M2/68‑63 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:35949506/1‑66 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:7831672/1‑66 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:32222669/68‑1 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcca < 1:8909115‑M2/68‑64 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcca < 1:30717359‑M2/68‑64 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:15340565/1‑68 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:32088425/1‑68 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:29451308/1‑68 (MQ=255) cAGAGCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:18688185/1‑68 (MQ=255) cAGAGCCGTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGcg > 1:20890624/1‑67 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa < 1:3960888‑M2/68‑65 (MQ=255) agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:6378771/1‑68 (MQ=255) agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:21258711/1‑68 (MQ=255) agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 1:12110613/67‑1 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacg < 1:22295805‑M2/68‑68 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac > 1:9703474‑M2/1‑1 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt > 1:30935866/1‑67 (MQ=255) gCCTACTCCCAAACCCACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTTCtttt > 1:20499120/1‑67 (MQ=255) | ATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA > CP009273/1204991‑1205125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |