| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2333843 | NA (NA) | 6 (0.010) | 4/98 | NT | NA | noncoding (52/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 2333873 | NA (NA) | noncoding (82/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 394 total aligned reads displayed.
TGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCAAA > CP009273/2333807‑2333940 | tGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa < 1:12988469/68‑1 (MQ=255) cgcgTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAcc > 1:24150268/1‑68 (MQ=255) gTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGt < 1:20002131/67‑1 (MQ=255) gTCTTATCACGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGt < 1:27280315/67‑1 (MQ=255) tCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTg > 1:6231892/1‑67 (MQ=255) cTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGc < 1:38535934/67‑1 (MQ=255) ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg < 1:32319699/68‑1 (MQ=255) ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg < 1:1754901/68‑1 (MQ=255) ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg < 1:27814187/68‑1 (MQ=255) ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg < 1:28324995/68‑1 (MQ=255) ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg < 1:32709260/68‑1 (MQ=255) ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg < 1:39235178/68‑1 (MQ=255) ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg < 1:4482012/68‑1 (MQ=255) ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg < 1:11745082/68‑1 (MQ=255) tATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGa < 1:921915/68‑1 (MQ=255) aTCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGAc < 1:30291869/68‑1 (MQ=255) aTCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGAc < 1:6776778/68‑1 (MQ=255) tCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt > 1:7355006/1‑68 (MQ=255) tCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt > 1:11038025/1‑68 (MQ=255) tCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt > 1:34874222/1‑68 (MQ=255) cAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacggggagcatt > 1:25206636‑M2/1‑54 (MQ=255) cAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTa > 1:26153839/1‑68 (MQ=255) aGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAg > 1:2154244/1‑68 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacggggagcattt > 1:23952935‑M2/1‑50 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAg < 1:28573002/65‑1 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAg < 1:103222/65‑1 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAg < 1:8892600/65‑1 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAg < 1:22106568/65‑1 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAg < 1:13209909/65‑1 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAg < 1:17079140/65‑1 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACa > 1:19472210/1‑68 (MQ=255) tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt < 1:7721331/68‑1 (MQ=255) tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt < 1:13955290/68‑1 (MQ=255) tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt < 1:12101915/68‑1 (MQ=255) tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt < 1:15092444/68‑1 (MQ=255) tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt < 1:2663794/68‑1 (MQ=255) tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt < 1:37671113/68‑1 (MQ=255) tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt < 1:2302072/68‑1 (MQ=255) aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGCCAGTGAt > 1:21186028/1‑68 (MQ=255) aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt > 1:35898763/1‑68 (MQ=255) aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt > 1:34053962/1‑68 (MQ=255) aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt > 1:3888395/1‑68 (MQ=255) aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt > 1:8555378/1‑68 (MQ=255) aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt > 1:2555398/1‑68 (MQ=255) aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt > 1:14326120/1‑68 (MQ=255) aaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAtt > 1:23448429/1‑68 (MQ=255) aaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAtt > 1:4758193/1‑68 (MQ=255) aaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAtt > 1:19225802/1‑68 (MQ=255) tGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTa > 1:806592/1‑67 (MQ=255) tGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTa > 1:18461217/1‑67 (MQ=255) tGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTa > 1:12619199/1‑67 (MQ=255) tGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTa > 1:30971172/1‑67 (MQ=255) gCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAcc < 1:30105394/68‑1 (MQ=255) gCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAcc < 1:10230203/68‑1 (MQ=255) gCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAcc < 1:15963223/68‑1 (MQ=255) gCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAcc < 1:22950920/68‑1 (MQ=255) gCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAcc > 1:25670553/1‑68 (MQ=255) tCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAt < 1:30819608/68‑1 (MQ=255) ccccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAtt < 1:18217040/68‑1 (MQ=255) ggCCGGATAAGGCGGTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGt < 1:23194210/68‑1 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCa > 1:34974038/1‑68 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCa > 1:25265945/1‑68 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCa > 1:2221991/1‑68 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGa < 1:31247387/67‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGAc > 1:16878445/1‑68 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGAc < 1:31848372/68‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGAc > 1:34468265/1‑68 (MQ=255) aaGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACa < 1:26759995/68‑1 (MQ=255) aaGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACa < 1:18973391/68‑1 (MQ=255) ggCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaa > 1:17692608/1‑68 (MQ=255) gCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTg > 1:9737055/1‑41 (MQ=255) gCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaaa > 1:5678514/1‑68 (MQ=255) cGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt < 1:33475119/39‑1 (MQ=255) cGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaaa > 1:14632531/1‑67 (MQ=255) cGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaaa > 1:35352955/1‑67 (MQ=255) cGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaaa > 1:24670871/1‑67 (MQ=255) cGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaaa > 1:12472637/1‑67 (MQ=255) cgccgcATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTg > 1:17313061/1‑67 (MQ=255) gccgcATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAACCACCCTGcc > 1:22656099/1‑68 (MQ=255) cgcATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCg < 1:11456236/67‑1 (MQ=255) cgcATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCg < 1:18043152/67‑1 (MQ=255) tCCGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcgg > 1:15639292‑M2/1‑6 (MQ=255) tCCGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcg < 1:20941580‑M2/67‑62 (MQ=255) tCCGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcg < 1:27491706‑M2/67‑62 (MQ=255) tCCGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcg < 1:29171661‑M2/67‑62 (MQ=255) tCCGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcg < 1:39496247‑M2/67‑62 (MQ=255) tCCGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcg < 1:38043500‑M2/67‑62 (MQ=255) tCCGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcg < 1:37199344‑M2/67‑62 (MQ=255) tCCGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcg < 1:36801023‑M2/67‑62 (MQ=255) tCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTgg < 1:29598451/68‑1 (MQ=255) tCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTgg < 1:30585100/68‑1 (MQ=255) ccGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcggc > 1:3961485‑M2/1‑5 (MQ=255) ccGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcggc > 1:25403067‑M2/1‑5 (MQ=255) ccGGCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcgg < 1:5298625‑M2/67‑63 (MQ=255) ccGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTggg < 1:6944767/68‑1 (MQ=255) ccGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTggg < 1:14972009/68‑1 (MQ=255) ggCctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcggcca > 1:36399184‑M2/1‑3 (MQ=255) cctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcggccaa < 1:5177156‑M2/67‑67 (MQ=255) cctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcggccaa < 1:38396220‑M2/67‑67 (MQ=255) cctacggggagcatttgtaggcctgataagacgcggcaagcgtcgcatcaggcattggcgcggccaa < 1:9337416‑M2/67‑67 (MQ=255) | TGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCAAA > CP009273/2333807‑2333940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |