| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 235 (0.490) | 26 (0.060) | 10/96 | NT | 9.3% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 303 (0.740) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
Only 100 of 460 total aligned reads displayed.
CGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAAC > CP009273/2845458‑2845591 | cctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:2110240‑M2/1‑1 (MQ=255)cctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:19086292‑M2/1‑1 (MQ=255)cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCgg < 1:38753658/68‑1 (MQ=255) ggATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:27358357/68‑1 (MQ=255) ggATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:889310/68‑1 (MQ=255) ctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGa < 1:29028139‑M2/2‑1 (MQ=255) ctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGa < 1:2262224‑M2/2‑1 (MQ=255) ctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:35886868‑M1/62‑1 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:10033355/1‑68 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:32367372/1‑68 (MQ=255) tcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTGTTCTTGATGAAAATCGCGCGACGGAACAg < 1:36759583‑M1/66‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:16095549/68‑1 (MQ=255) cCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAgg < 1:6078783‑M1/67‑1 (MQ=255) cggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAGGt < 1:7179399‑M2/8‑1 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAgg > 1:32900130‑M1/1‑67 (MQ=255) GGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:4022824‑M1/1‑67 (MQ=255) CGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt < 1:37168901‑M1/68‑1 (MQ=255) CGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt < 1:24204236‑M1/68‑1 (MQ=255) CGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt < 1:27975556‑M1/68‑1 (MQ=255) CGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt < 1:30843362‑M1/68‑1 (MQ=255) CGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt < 1:35377504‑M1/68‑1 (MQ=255) CGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt < 1:11713149‑M1/68‑1 (MQ=255) GCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt > 1:25277396‑M1/1‑67 (MQ=255) gcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAGGTGATGc < 1:28716649‑M2/13‑1 (MQ=255) gatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAGGTGATGCAg < 1:36692252‑M2/15‑1 (MQ=255) gatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAGGTGATGCAg < 1:34189123‑M2/15‑1 (MQ=255) gataatcaacaacaaaacgcattaattttcctcgccatacaacagcgcgccgGAACAGGTGATGCAGt < 1:18197448‑M2/16‑1 (MQ=255) gttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGtt < 1:29562073/68‑1 (MQ=255) gttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGtt < 1:33926176/68‑1 (MQ=255) tgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTa < 1:1312166/67‑1 (MQ=255) tcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAGGTGATGCAGTTAAtt < 1:33235738‑M2/21‑1 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAGTTg > 1:2484273/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAAtt > 1:36365290/1‑67 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAAtt < 1:2561113/67‑1 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:21593992/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:2178331/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:20707244/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:11453044/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:32546162/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:12450978/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:14935915/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:3821729/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:37020650/1‑68 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:10351483/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:6306323/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:4425188/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:7571625/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:36965280/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:32745919/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:12048806/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:1477404/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:16773548/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:17507679/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:18502287/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATAGa > 1:30115117/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGACGGAACAGGTGATGCAGTTAATTGAg > 1:2374953/1‑68 (MQ=255) cGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCa > 1:4560323/1‑68 (MQ=255) ggAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCa > 1:27181837/1‑65 (MQ=255) aaaaaTAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCt < 1:486219/66‑1 (MQ=255) aaaaaTAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTgc > 1:22877771/1‑68 (MQ=255) aaaaTAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTgc < 1:20256117/67‑1 (MQ=255) taatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGaa < 1:9688183/68‑1 (MQ=255) aatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAAc > 1:1166003/1‑68 (MQ=255) tGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt < 1:10854160/68‑1 (MQ=255) tGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt < 1:16501986/68‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGGCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt < 1:690906/68‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt > 1:2221565/1‑68 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt > 1:32053594/1‑68 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt < 1:11854109/68‑1 (MQ=255) tttGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTc < 1:30454682/68‑1 (MQ=255) tttGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATAGAGCATCTGCGCGAACGTGCtt < 1:2307700/67‑1 (MQ=255) gttgATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTcaca > 1:12903084/1‑68 (MQ=255) gttgATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTcaca > 1:38984357/1‑68 (MQ=255) gttgATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTcaca < 1:24562563/68‑1 (MQ=255) gttgATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTcaca > 1:15039044/1‑68 (MQ=255) gttgATGAATATCGCGCGCAGGAACAGGTGATGCAGTTAATTGAGCTTCTGCGCGAACGTGCTTcaca > 1:13883060/1‑68 (MQ=255) gatgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtct < 1:23309958/68‑1 (MQ=255) gatgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtct < 1:37713212/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:14435304/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:17244892/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:13555585/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:35677743/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:34657540/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:26236753/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:28445982/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:11072608/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctc > 1:19779378/1‑67 (MQ=255) atacaacagcgcgccgGAACAGGTGATGCAGTTAATTGAGAATCTGCGCGAACGTGCTTCACAtctct < 1:31355003‑M2/52‑1 (MQ=255) aaTATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATctctct > 1:26902601/1‑68 (MQ=255) aaTATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATctctct > 1:8436869/1‑68 (MQ=255) aaTATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATctctct > 1:26443341/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:6780176/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:3379008/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:24084504/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:10740740/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:15369377/1‑68 (MQ=255) gcgcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAcc > 1:5589222‑M2/9‑68 (MQ=255) gcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccg > 1:5261599‑M2/7‑67 (MQ=255) gcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccg > 1:7797451‑M2/7‑67 (MQ=255) gccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccgccg > 1:33460516‑M2/5‑68 (MQ=255) | CGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAAC > CP009273/2845458‑2845591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |