| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2943957 = | NA (NA) | 6 (0.020) | 4/92 | NT | NA | intergenic (+25/+37) | argA/recD | fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase/exonuclease V (RecBCD complex), alpha chain |
| ? | CP009273 | 2943974 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 558 total aligned reads displayed.
AAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGT > CP009273/2943907‑2944041 | tggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGt < 1:17109647‑M2/2‑1 (MQ=255) gtgtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTc > 1:38316064/1‑68 (MQ=255) gtgtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTc > 1:34614214/1‑68 (MQ=255) ggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTc > 1:8448771‑M2/66‑68 (MQ=255) tgtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTc > 1:16965544/1‑67 (MQ=255) gtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGc < 1:17461368/68‑1 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:15056009‑M2/64‑68 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:35107576‑M2/64‑68 (MQ=255) ggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCa > 1:25118311‑M2/63‑68 (MQ=255) ggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCa > 1:14499456‑M2/63‑68 (MQ=255) gATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATc < 1:26399996/68‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:16337168/1‑68 (MQ=255) tgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCATCCg > 1:4723334‑M2/58‑67 (MQ=255) cGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc < 1:24543085/67‑1 (MQ=255) gATTTAGGGTAAGCGATCAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAAt < 1:29052188/68‑1 (MQ=255) ttAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTAc > 1:6676279/1‑68 (MQ=255) ttAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTAc < 1:6445843/68‑1 (MQ=255) tcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCATCCGGCAATTACg < 1:37330223‑M2/19‑1 (MQ=255) tcacgggaataaacgtaattgccggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:32630615‑M1/36‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:7568425/68‑1 (MQ=255) tAGGGGAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:5393811/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:33648565/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:9071403/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:3532618/68‑1 (MQ=255) gggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGtt > 1:13719538/1‑68 (MQ=255) gggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGtt > 1:12169788/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:31860626/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:4421600/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:25716663/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:9636847/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:11232349/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:15604005/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:8247941/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACAATCGTACGTCGCATCCGGCAATTACtttt > 1:13051736/1‑68 (MQ=255) gCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTc > 1:19106868/1‑67 (MQ=255) gATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTcc < 1:10017194/66‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:5869739/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:34030086/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:26026470/68‑1 (MQ=255) aaaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAAc < 1:11909209/68‑1 (MQ=255) aaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACt > 1:28859511/1‑68 (MQ=255) aaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACt < 1:39253371/68‑1 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:19764951‑M1/7‑68 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:3566532‑M1/7‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAGCTAAACAAcgcc < 1:28136348‑M1/62‑1 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:31027605‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:34893978‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:24234582‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc < 1:7046705‑M1/62‑1 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:27839817‑M1/4‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:21958431‑M1/4‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:29646899‑M1/4‑68 (MQ=255) cATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAg < 1:4986395‑M1/67‑1 (MQ=255) aTGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAg > 1:16720797/1‑67 (MQ=255) gCGTAACACTCGTACGTTGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:32839713/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:23465420/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:22469594/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:32112635/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:30348415/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:36785723/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc > 1:20610375/1‑68 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc > 1:19489315/1‑68 (MQ=255) gTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTGCCGTGAACTAAACAACGCAGCCAGAcc > 1:26661426/1‑66 (MQ=255) gTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc > 1:21631668/1‑66 (MQ=255) aaCACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACt < 1:22922439/67‑1 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc > 1:6197559/1‑68 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc < 1:9166318/68‑1 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCCCTgcg > 1:782139/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:21385941/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:15333707/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:28557962/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:14696360/1‑67 (MQ=255) cTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgcc > 1:10368412/1‑68 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:20282532/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:10923682/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:12033098/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:13569377/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:17938643/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:18534644/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:30756669/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgcc > 1:36349585/1‑66 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGACAGACCACTGcgcc > 1:14063574/1‑66 (MQ=255) cGTACGTCGCATCCGGCAATTACGTCTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:27004025/68‑1 (MQ=255) gTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCACt < 1:31262682/68‑1 (MQ=255) tACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTc > 1:12583473/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:29980584/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:12447512/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:12715134/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:13297848/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:7161097/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:30623090/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:18932514/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:23797159/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:3872115/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:38087695/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACCCCGCCAGACCACTGCGCCGCTCa > 1:34295314/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:14272574‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:20884299‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:27337724‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:31511893‑M2/1‑68 (MQ=255) | AAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGT > CP009273/2943907‑2944041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |