| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,460,593 | C→G | 8.7% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,460,593 | 0 | C | G | 8.7% | 1088.8 / 46.9 | 360 | pseudogene (945/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base C (189/132); new base G (15/13); total (215/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 421 total aligned reads displayed.
TCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCC > CP009273/1460526‑1460659 | tCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTggcaccggcacc < 1:10377594/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCACTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:24546793/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAg < 1:39426310/67‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGa < 1:4469570/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:16753162/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:28088214/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:19034051/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:20227920/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:22122042/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:24979290/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:2616125/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:26719896/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:29513211/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:30527973/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:32041367/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:33023619/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:38497783/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:13990764/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:11371896/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:15309040/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:10627364/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:14596785/68‑1 (MQ=255) cGGTGACAAGGCCATCGGCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:23298297/68‑1 (MQ=255) ggTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAt > 1:29813104/1‑68 (MQ=255) cAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACTCAGATaaacg > 1:37061106/1‑66 (MQ=14) cAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCa > 1:18753093/1‑60 (MQ=255) aaGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATgg < 1:8579473/68‑1 (MQ=255) aaGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATgg < 1:33438749/68‑1 (MQ=255) ggCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtg > 1:20505503/1‑68 (MQ=255) ggCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtg > 1:23718773/1‑68 (MQ=255) ggCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtg > 1:1003272/1‑68 (MQ=255) ggCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtg > 1:28837970/1‑68 (MQ=255) ggCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAGGGtg > 1:8906120/1‑68 (MQ=255) gCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtga > 1:25853891/1‑68 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATGAACGGtgaa > 1:37510129/1‑67 (MQ=14) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgat > 1:14795097/1‑68 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgat > 1:27800685/1‑68 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtga < 1:34055661/67‑1 (MQ=255) ccAGCGTCAATAACGAAGGCGAGAGCACCATCCCCAACGGTGGCACCGTCACCCAGATTAATGGtga < 1:23193119/67‑1 (MQ=18) cGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGAc > 1:34277943/1‑67 (MQ=255) cGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGAc > 1:34764626/1‑67 (MQ=255) cGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACg < 1:15667730/68‑1 (MQ=255) gTCAATAACGAAGGCGAGAGCACCATCACCAACGGGGGCACCGGCACGCAGATTAAGGGTTAGGACg > 1:21904035/1‑67 (MQ=14) tCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGa < 1:30043717/51‑1 (MQ=11) aaTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCAc < 1:5597233/68‑1 (MQ=255) acaaCGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACg < 1:21629660/66‑1 (MQ=255) aTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGTTGACGCCACg < 1:35576953/68‑1 (MQ=255) aTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACg > 1:1359039/1‑68 (MQ=255) aTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACg > 1:36540067/1‑68 (MQ=255) aTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAAGGTCATGACGCCACg > 1:26493583/1‑68 (MQ=255) aTAACGAAGGCGAGAGCACCAT‑‑CCAACGGTGGCACCTGCACCCAGATTAATGGTGATTACGCCACGGc < 1:12091391/68‑1 (MQ=17) tAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAAAGGTGAAGACGCCACg > 1:32436228/1‑67 (MQ=11) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGc < 1:32888517/68‑1 (MQ=255) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGc < 1:13111814/68‑1 (MQ=255) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGc < 1:18368435/68‑1 (MQ=255) aCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCa > 1:2840175/1‑68 (MQ=255) cGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCCCGGCaa > 1:17452427/1‑68 (MQ=255) cGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCaa < 1:35105001/68‑1 (MQ=255) cGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCaa < 1:34445704/68‑1 (MQ=255) gAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCaaa < 1:37381701/68‑1 (MQ=255) aGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaaca < 1:29107177/68‑1 (MQ=255) aGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaaca < 1:9198398/68‑1 (MQ=255) ggCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaaca > 1:12436994/1‑67 (MQ=255) agagCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaacaacaac > 1:36084290/1‑68 (MQ=255) gCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGc > 1:32596350/1‑68 (MQ=255) gCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGc > 1:25613062/1‑68 (MQ=255) gCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGc > 1:30832714/1‑68 (MQ=255) cACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACACCGGCa > 1:771532/1‑68 (MQ=255) ccATCACCAACGTTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCaaa < 1:1190544/68‑1 (MQ=255) aTCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCaaaa > 1:4019447/1‑67 (MQ=40) cACCAACGGTGTCTCCGGCACCCAGATTAATGGTGATGAAGCCACGGCAAACAACAACGGCAAAacca < 1:3492767/68‑1 (MQ=14) cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAaccacag > 1:11537194/1‑66 (MQ=255) cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCg > 1:7003644/1‑68 (MQ=40) cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCg > 1:9347008/1‑68 (MQ=40) cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCg > 1:31366809/1‑68 (MQ=40) cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCg > 1:27408347/1‑68 (MQ=40) cAACGGTGGCACCGGCACCCAGATTAATGGTGAAGACGCCACCGCGAAAAACACGGGAAAAacc > 1:5839911/1‑64 (MQ=14) aCGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGtt > 1:16029859/1‑68 (MQ=40) cGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGtt > 1:21147781/1‑67 (MQ=40) cGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTg > 1:17849735/1‑68 (MQ=40) ggTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTg > 1:6885540/1‑67 (MQ=40) gTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCGAAAAACAGAGGAAAAACCACTGTTGaa > 1:19385970/1‑67 (MQ=14) gTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGAc > 1:24051440/1‑68 (MQ=40) gTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGAc > 1:8228125/1‑68 (MQ=40) gTGGCACCGGCACCCAGATTAAAGGTGATGACGCCACGGCAAAAAACACAGGAAAAACCACGGTTGag > 1:5105663/1‑67 (MQ=11) tGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAGCAACGGCAAAACCACCGTTGACg > 1:5178565/1‑68 (MQ=255) ggcaccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACg < 1:3799433/67‑1 (MQ=40) ggcaccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACg < 1:25412679/67‑1 (MQ=40) ggcaccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACg > 1:16436858/1‑67 (MQ=40) accggcaccCAGATTAATGGTGATGACGCCACGGCGAAAAACACAGGCAAAACCACAGTTGAAggaa > 1:35816315/1‑65 (MQ=14) accggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCaa > 1:12743359/1‑68 (MQ=40) accggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCaa > 1:6092984/1‑68 (MQ=40) cggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAgg < 1:25521560/68‑1 (MQ=40) cggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAgg < 1:19744512/68‑1 (MQ=40) ggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGa < 1:28543355/68‑1 (MQ=40) accCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAtt > 1:6574586/1‑67 (MQ=40) accCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAtt < 1:10907400/67‑1 (MQ=40) accCAGATTAATGGTGATGACGCCACGGCAAAAAACACAGGAAAAACCACCGTTGACGGAAAGGAtt > 1:21441353/1‑67 (MQ=14) ccAGATTAATGGTGATGACGCCACGGCAaacaacaa > 1:22778445/1‑36 (MQ=255) ccAGATTAATGGTGATGACGCCACGGCAAAAAACAACGGAAAAACCACGGTTGAAGGAAAGGATTcc > 1:39052201/1‑67 (MQ=11) | TCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCC > CP009273/1460526‑1460659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |