| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,036 | G→C | 7.9% | A621P (GCC→CCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,036 | 0 | G | C | 7.9% | 693.8 / 9.9 | 288 | A621P (GCC→CCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base G (140/112); new base C (2/23); total (143/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.85e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 328 total aligned reads displayed.
AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGA > CP009273/1702971‑1703103 | aGCGCGCAAGCTGGACCAGCCACAGGCTAATGCGGTACCAGAAGAGCAGGTGGATCCGCGCGAAgccg > 1:13288263/1‑68 (MQ=11) aGCGCGCAAGCTGGAACAGCAACAGGCTCTTGCGGATACAGAAGACCCGGTGCATCCGCGCAAAgcg > 1:33718215/1‑66 (MQ=2) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGATACAGAAGAAAAGGTCGATCCGCGCAAAgcg > 1:23355057/1‑66 (MQ=11) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAgcg > 1:2831549/1‑66 (MQ=255) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcg > 1:25656856/1‑66 (MQ=25) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc > 1:36006701/1‑67 (MQ=35) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc > 1:3834723/1‑67 (MQ=35) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcg > 1:19599455/1‑66 (MQ=255) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcc > 1:23143981/1‑67 (MQ=25) gcgcgcAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTAGATCCGCGCAAAgccg > 1:2790081/1‑67 (MQ=255) gcgcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAgcgg > 1:12252059/1‑65 (MQ=255) gcgcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcgg > 1:21740339/1‑65 (MQ=25) gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgc < 1:1551447/66‑1 (MQ=35) gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGccgccg < 1:29458870/68‑1 (MQ=35) gcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGt < 1:5759061/67‑1 (MQ=35) aaGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTGGa > 1:35675300/1‑68 (MQ=25) aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGaa > 1:14375165/1‑68 (MQ=35) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:34626419/68‑1 (MQ=35) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:16608561/68‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:33347622/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:11674220/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:14299390/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:5193232/67‑1 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCGGCTa > 1:16940167/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTa > 1:10427716/1‑68 (MQ=25) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:29244886/67‑1 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCGGCTa > 1:11479695/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGACGCGGCTa > 1:10033011/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTa > 1:20532435/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTa > 1:31315962/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGCTCCGCGCAAAGCCGCCGGCGAAGCGGCTa > 1:2604347/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTa > 1:8985232/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCCGCTa > 1:5397117/1‑68 (MQ=11) aGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAtt > 1:33643679/1‑68 (MQ=35) aGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAtt > 1:19782620/1‑68 (MQ=35) aGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTGGACGCGGCTAtt > 1:3264903/1‑68 (MQ=11) aaCAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:21164762/67‑1 (MQ=35) aaCAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCGGCTATTGc > 1:35446324/1‑67 (MQ=11) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGAGc > 1:7035110/1‑68 (MQ=11) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGCAGCCGCTATTGCCCgag > 1:6205930/1‑65 (MQ=11) gCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTTGCAGCCGCTATTGCCCGAGc > 1:13804574/1‑68 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGc < 1:25501604/67‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGCCGCCGCTATTGCCCGAGcc > 1:6436594/1‑68 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGcc > 1:21926189/1‑68 (MQ=255) tAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGACGACGCTATTGCCCGAGCCa > 1:15033748/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCGGCTATTGCCCGAGCCAAAGc > 1:9055033/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCGaatg > 1:10187896/1‑65 (MQ=255) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGc > 1:30218977/1‑68 (MQ=35) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCCGCTATTGCCCGAGCGaagg > 1:31206040/1‑65 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGAGCAAAGGc > 1:26417266/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCAAAAg > 1:7912416/1‑67 (MQ=11) aCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCa > 1:31084111/1‑68 (MQ=255) ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCCAAGCCGCTATTGCCCGAGCCAAAGCACGCaa > 1:8375148/1‑68 (MQ=255) ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGACGCCGCTATTGCCCGAGCAAAAGCACGCaa > 1:24920968/1‑68 (MQ=11) cagcagAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:35166327/68‑1 (MQ=255) cAGAAGACCATGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:19528497/68‑1 (MQ=255) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:16152633/68‑1 (MQ=40) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:12860838/68‑1 (MQ=40) cAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:22406374/68‑1 (MQ=255) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCAAAAGCACGCAAGcgg > 1:18861930/1‑66 (MQ=11) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTg > 1:14596981/1‑68 (MQ=40) aagaaCAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGAGCGAAAGCCCCCAAggtc > 1:11130572/1‑65 (MQ=11) aagaaCAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTg > 1:4178725/1‑68 (MQ=14) acaaCAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCt < 1:36356463/64‑1 (MQ=9) gaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGa > 1:3905840/1‑68 (MQ=14) acaCAGGCCGATCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:20095008/66‑1 (MQ=11) aagaGGCCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 1:24308773/65‑1 (MQ=11) aaCAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGTGCCAAAGCACGCAAGCGGGa > 1:20194321/1‑67 (MQ=255) aaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGa > 1:33987608/1‑67 (MQ=25) aaCAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGTGCCCAAGCACGCAAGCTGGa > 1:29808768/1‑67 (MQ=11) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 1:5606394/67‑1 (MQ=35) aCAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 1:2462810/67‑1 (MQ=25) ggcGATCCTCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:1314896/66‑1 (MQ=11) ggcGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:19414515/66‑1 (MQ=25) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:22811937/1‑68 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:23499986/1‑67 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:38568059/1‑67 (MQ=25) tCCTCGTAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:26979497/68‑1 (MQ=11) tCCTCGTAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:27442313/68‑1 (MQ=11) tCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:16398511/68‑1 (MQ=25) tCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:22611719/68‑1 (MQ=11) tCCTCGCAAACCAGCCGTCGAAGCCGCTATAGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:18232559/68‑1 (MQ=11) tCCTCGAAAATCGGCCGTCGAAGCAGCTATAGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:26734134/68‑1 (MQ=11) tCCGCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:37202175/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:37941586/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:3190676/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:33031054/68‑1 (MQ=35) tCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:36864073/68‑1 (MQ=25) tCCCCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:9507442/68‑1 (MQ=255) tCCACGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:21385572/68‑1 (MQ=255) cccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:34769714/67‑1 (MQ=25) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:23927861/1‑66 (MQ=35) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGCACAGCAACAg > 1:12987231/1‑66 (MQ=255) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAACGCACGCAAGCTGGACCAGCACCAGGCt > 1:17812521/1‑68 (MQ=11) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:27658908/1‑68 (MQ=35) aaaCCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:16737708/67‑1 (MQ=255) aaGCCGCCGTCGAAGCCGCTATTGCCCGTGCGAACGCACGCCCGCTGGAACAGCAACAGGCTAATGcg > 1:2440565/1‑67 (MQ=11) aaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGcc > 1:37571572/1‑68 (MQ=37) gccgccGTCGAAGGCGCTATTGCCCGTGCAAAAGCACGCAAGCTGGAACAGCAACCGGCTAATGCCGa > 1:28599978/1‑68 (MQ=14) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGcgg > 1:7286269/1‑65 (MQ=9) | AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGA > CP009273/1702971‑1703103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |