| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,158 | A→C | 14.8% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,158 | 0 | A | C | 14.8% | 639.0 / 31.0 | 371 | R661R (CGA→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base A (180/129); new base C (50/11); total (231/140) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.54e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 389 total aligned reads displayed.
AGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGC > CP009273/1703091‑1703222 | gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGc > 1:34042229/1‑68 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCgcgc > 1:29271405/1‑68 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTAGATCCTCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:11327359/1‑67 (MQ=14) cTACTGCCGACCCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:16426163/66‑1 (MQ=14) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGcc > 1:36788134/1‑68 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:35660572/66‑1 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGcc > 1:33408898/1‑68 (MQ=255) cTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGc < 1:12321737/67‑1 (MQ=255) cTAATGCCGACCCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:28646466/65‑1 (MQ=255) atAATGCCGACCCAGAACACGTGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:28184717/64‑1 (MQ=11) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAg > 1:26597382/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAg > 1:32829663/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAg > 1:24744168/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCAAAAg > 1:14197580/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:9369610/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:19599096/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:17955010/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:29621513/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:34474315/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:39207846/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAg > 1:11184331/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCCAAAg > 1:23377146/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAg > 1:35287785/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGCGCCAAAg > 1:18868731/1‑67 (MQ=255) aaccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGAGCAAAAgcccgc > 1:32441231/3‑68 (MQ=11) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:6990469/1‑68 (MQ=35) cAGAACAACAGGGCGTGCCGCGATAAGCCGCCTTCGAAGACGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:31711394/68‑1 (MQ=11) cAGAACAACAGGGCGATCCGCGCAAAGGCGCCGTCTAAGCCTCTATTGCCCGAGCCAAAGCGCGCaaa < 1:10930945/68‑1 (MQ=11) cAGAAAAAGAGGCGGATCCGCGGAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:17017784/68‑1 (MQ=11) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAACGCGCGCAAACggg > 1:10190837/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACggg > 1:21074470/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACgcg > 1:18562718/1‑66 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAACgg > 1:16195542/1‑67 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:34902209/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:17618210/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:39468032/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg < 1:7104924/68‑1 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGAGCCAAAGCGCGCAAGCgcg > 1:30032258/1‑66 (MQ=11) acaacaGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGAGCCAAGGCGCGAAAACggg > 1:329043/1‑68 (MQ=14) acaacaCGTCGATCCGCGCAAAGCCGCCGTCGTAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg < 1:6478026/68‑1 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCATCGCGCGCAAACGGGa > 1:37984019/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCTAACGGGa > 1:9726764/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa > 1:27326311/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAGCGGGa > 1:37620448/1‑67 (MQ=255) aacaGGCCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGaa < 1:32236777/68‑1 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAAc > 1:307722/1‑68 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc > 1:24197155/1‑68 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACa > 1:34407201/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGCGAACa > 1:4651921/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:25808964/1‑63 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:33092781/1‑68 (MQ=255) gTCAATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:25994153/1‑68 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAACAGCa > 1:15613837/1‑67 (MQ=25) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:7304468/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:37398259/1‑67 (MQ=255) gcGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:10592927/66‑1 (MQ=14) gcGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:20791404/66‑1 (MQ=14) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAcc > 1:27732258/1‑68 (MQ=255) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAca > 1:5438486/1‑67 (MQ=255) tCCTCGCAAACCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg < 1:31451036/67‑1 (MQ=17) tCCGCGCTAAGCCGACGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:14792894/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAGCCg > 1:8576156/1‑67 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:15188625/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:13551478/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:4285484/1‑67 (MQ=255) tCCCCGTAAACCTGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:5962377/68‑1 (MQ=17) tCCCCGAAAATCTGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:10004399/68‑1 (MQ=17) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:8257002/1‑66 (MQ=255) ggcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:9135785/65‑1 (MQ=255) cgcgCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAACGCGCGCAAACGGGACCAGCAACCGGCt > 1:23786532/1‑68 (MQ=14) gcAAAGCCGCCGTCGAATCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt < 1:18692429/68‑1 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt > 1:22374144/1‑68 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt > 1:37220659/1‑68 (MQ=255) cccgccgTCGAAGCCGCTATTGCCCGCCCCAACGCGCGCAACCGGGAACAGCAACCGGCTAATGCGGa < 1:20142847/67‑1 (MQ=14) ggTCGTAGCTGCTATTTAGCGAGAGAAAGCGCGCAACCGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:23952148/66‑1 (MQ=255) cgTTGAAGCAGCTATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:21871841/67‑1 (MQ=14) cgTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:3425026/67‑1 (MQ=255) cgTCGAAGCAGCTACTGCCCGAGCCAAAGCGCGCATACGGGAACCGCAACCGGCTAATGCGGAGCCa < 1:26643660/67‑1 (MQ=18) tCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGACCAGCAACCGGCTAATGCGGAGCCagaa > 1:12853256/1‑68 (MQ=255) tCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaa > 1:5729629/1‑68 (MQ=255) cGAAGCAGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag < 1:12656057/68‑1 (MQ=255) gAAGCCGCTATAGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:30410486/68‑1 (MQ=255) ccGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg > 1:26391348/1‑68 (MQ=255) ccGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg > 1:8926085/1‑68 (MQ=255) ctgtATTGCCCGATCGAATTCGCGCAAACGTGAAACGCAACAGGCTAATGCGGAGCCAGAAGAACAg < 1:31075314/64‑1 (MQ=9) ctcTATTGCCAGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:2131872/65‑1 (MQ=17) agCTATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:25176105/66‑1 (MQ=255) tGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGAt > 1:24405762/1‑67 (MQ=255) tGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGAt > 1:1511210/1‑67 (MQ=255) gCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:33613539/1‑68 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGATCAAGAAGATCAGGTTGATcc > 1:27616648/1‑67 (MQ=18) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:19297525/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:11976093/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:13125836/1‑67 (MQ=255) ccGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc < 1:22833829/68‑1 (MQ=255) ccGAGCCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc < 1:7677038/68‑1 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:5203197/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc < 1:36488936/68‑1 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:26897488/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:29455541/1‑68 (MQ=255) | AGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGC > CP009273/1703091‑1703222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |