| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,295 | T→A | 7.7% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,295 | 0 | T | A | 7.7% | 1097.7 / 37.9 | 374 | V707E (GTA→GAA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (165/176); new base A (22/9); total (187/187) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.31e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 401 total aligned reads displayed.
GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCA > CP009273/1703228‑1703360 | gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCACGCTGGAACCGCAACAGGCTAATGCGGt > 1:32045690/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:36403934/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:10589196/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:22844315/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:30781649/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:30129177/1‑68 (MQ=255) cTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:30511665/68‑1 (MQ=255) cTGCCGTCGAAGCAGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:11589126/68‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCTAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:1640485/67‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGAGCCAAATCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:23774376/67‑1 (MQ=255) tGCCGTCGAAGCGGCTATAGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:9570093/66‑1 (MQ=11) cGTCGAAGCGGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCTGTACCa < 1:21657309/67‑1 (MQ=17) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCag > 1:1338725/1‑68 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCag > 1:30933323/1‑68 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:39108496/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:5463255/67‑1 (MQ=255) gTCGAAGCTGCTATTGCACGAGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga < 1:14025059/68‑1 (MQ=14) gTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga < 1:35794954/68‑1 (MQ=255) ggAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaag < 1:19028439/67‑1 (MQ=255) cGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa < 1:16755706/67‑1 (MQ=255) gAAGCTGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:24894638/68‑1 (MQ=255) aaGCTGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:12158665/67‑1 (MQ=255) aGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc > 1:15311803/1‑68 (MQ=255) tgCTATTGCACGCGCCAAAGCTCGCTAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:26152070/66‑1 (MQ=14) tgCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAgg < 1:6858296/67‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:7665458/66‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:19828157/66‑1 (MQ=255) ggCTATTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAgg < 1:7844952/68‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:17980974/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:14906721/67‑1 (MQ=255) cgCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:17376632/66‑1 (MQ=255) cgCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:20633351/66‑1 (MQ=255) agCTATCGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:31196284/66‑1 (MQ=11) gCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:15152479/1‑68 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCACCAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:19990388/1‑67 (MQ=255) aCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc < 1:37835676/68‑1 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:28529574/1‑68 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:7367227/1‑68 (MQ=255) gcCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaa > 1:14536917/1‑68 (MQ=255) gcCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCa < 1:24047170/67‑1 (MQ=255) cAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa < 1:23392555/67‑1 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:3357962/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:17030657/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:17824734/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:32706453/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:33846475/1‑68 (MQ=255) aCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAg > 1:29045918/1‑68 (MQ=255) cAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGtt > 1:8368286/1‑67 (MQ=255) aaGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTg < 1:11983328/67‑1 (MQ=255) aaGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTg < 1:23512842/67‑1 (MQ=255) aGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGcc < 1:1620955/68‑1 (MQ=255) aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTGGATCCGCGCAAAGCGGCAGTAGcc > 1:31471038/1‑68 (MQ=11) tGGAACAGCAACAGGCTAATGCGGTTCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:27017321/68‑1 (MQ=255) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:34326702/68‑1 (MQ=255) aaCAGCAACCGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:31902627/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:29459132/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:22067616/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:27729860/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:5175306/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:18505274/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:18763736/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:19435155/67‑1 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:3675856/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:15774490/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:16055773/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:24374583/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:24542598/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:34755548/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGCCGCGGCTa > 1:4985329/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGCCGCGGCTa > 1:10202818/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCAGCGGCTa > 1:33230255/1‑68 (MQ=11) cAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAt > 1:12450974/1‑68 (MQ=255) aGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAtt > 1:21181048/1‑68 (MQ=255) aGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAtt > 1:11131655/1‑68 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:10451340/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:27502052/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:20382364/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:23085019/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc > 1:37241408/1‑67 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc > 1:32435718/1‑67 (MQ=255) aGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:29914979/1‑68 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:2815303/1‑66 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgcg < 1:5906047/66‑1 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc < 1:22183898/67‑1 (MQ=255) tGCTGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:35654169/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:4059364/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:10854553/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:11361980/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:25272902/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:39533233/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:2709369/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:29797709/68‑1 (MQ=255) tGCGGACCCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:29670336/68‑1 (MQ=21) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:38725171/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:18283913/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:12738192/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGc < 1:26761311/68‑1 (MQ=255) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGCAGCGGCTATTGCCCGCGCGCAgg > 1:9873593/1‑67 (MQ=14) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTTGCCGCGGCTATTGCCCGCGCGCAgg > 1:4608826/1‑67 (MQ=14) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGACGCGGCTATTGCCCGCGCGCAgg > 1:25404276/1‑67 (MQ=11) | GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCA > CP009273/1703228‑1703360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |