| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,711,673 | A→C | 8.4% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,711,673 | 0 | A | C | 8.4% | 803.0 / 7.4 | 287 | V72G (GTT→GGT) | yfiF | putative methyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (194/64); new base C (2/26); total (197/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.13e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 297 total aligned reads displayed.
AAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGG > CP009273/2711607‑2711740 | aaaCTTTTACCACTGATGCCACCGTGCTCGGCCTTTTCC‑GGCGTCTCATCGCCCGGCGCGCGGGAAAc < 1:2190536/68‑1 (MQ=255)aaaCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAAc < 1:32245203/68‑1 (MQ=255) aaCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAAcc < 1:21468549/68‑1 (MQ=255) aCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTTATCACCCGGCGCGCGGGAAACCg > 1:10740653/1‑68 (MQ=255) aCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCg > 1:9760066/1‑68 (MQ=255) aCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCg > 1:10027347/1‑68 (MQ=255) aCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCg > 1:3300036/1‑68 (MQ=255) aCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCg > 1:4143148/1‑68 (MQ=255) aCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCg > 1:4754853/1‑68 (MQ=255) aCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCCGCGCGCGGGAAACCg > 1:21616230/1‑68 (MQ=255) ttttACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGt > 1:8119894/1‑67 (MQ=255) ttttACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGt > 1:18991102/1‑67 (MQ=255) ccACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGcc > 1:14964887/1‑67 (MQ=255) cACTGATGCCACCGTGATCGTCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGAG‑CGCCAc > 1:20002816/1‑68 (MQ=255) cACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCAc > 1:36532281/1‑68 (MQ=255) cACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCAc > 1:4696441/1‑68 (MQ=255) cACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCAc > 1:31816546/1‑68 (MQ=255) cACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCAc > 1:7281829/1‑68 (MQ=255) cACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCAc > 1:28100797/1‑68 (MQ=255) cACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCAc > 1:2863337/1‑68 (MQ=255) cACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCAc > 1:17148940/1‑68 (MQ=255) cACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCAc > 1:1438747/1‑68 (MQ=255) aCTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGccggg < 1:36257395/68‑4 (MQ=255) aCTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACg > 1:9281321/1‑68 (MQ=255) aCTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACg > 1:39476210/1‑68 (MQ=255) tGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGaa > 1:3343370/1‑68 (MQ=255) tGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGaa > 1:25629321/1‑68 (MQ=255) ccACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGaa > 1:5394432/1‑66 (MQ=255) ccACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGaa > 1:25007463/1‑66 (MQ=255) ccccGGGACCGGCCTTTGCC‑GGCGGCTCATCCCCGGGCGCGCGGGAACCCGGG‑CGCCACGGCGAATCt < 1:28528363/66‑1 (MQ=255) cACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCt > 1:14207304/1‑68 (MQ=255) ccGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCtt > 1:34041911/1‑67 (MQ=255) ccGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCtt > 1:22738037/1‑67 (MQ=255) cGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTc > 1:32724194/1‑67 (MQ=255) cGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTc > 1:15761226/1‑67 (MQ=255) cGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTc > 1:26529086/1‑67 (MQ=255) cGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTc > 1:38454589/1‑67 (MQ=255) cGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTc > 1:6516925/1‑67 (MQ=255) cGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTc > 1:37751984/1‑67 (MQ=255) gTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTccc > 1:11913578/1‑68 (MQ=255) gagcGGCCTTTTCC‑GGGTTCTCACCCCCCGGGGCGCGGTAACCGGGG‑CGCCACGGCGAATCTTCCCa < 1:26149547/64‑1 (MQ=255) tCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCGCtt > 1:13458842/1‑68 (MQ=255) tCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACtt > 1:37637745/1‑68 (MQ=255) tCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACtt > 1:30042373/1‑68 (MQ=255) tCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACtt > 1:34793382/1‑68 (MQ=255) cGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACtt > 1:1922325/1‑67 (MQ=255) cGGCCCTTTCCGGGGGGCTCATCCCCCGGCGCGCGGGAACCCGTG‑CGCCACGGCGAATCTTCCCACt < 1:30340242/67‑1 (MQ=255) ggCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGc > 1:2535474/1‑68 (MQ=255) ggCCTTTTCC‑GGCGGCTCATCCCCCGGCGCGGGGTAAACCGGG‑CGCCACGGCGAATCTTCCCACTTg < 1:5935595/67‑1 (MQ=255) cgCCTTTCCC‑GGCGACACCCCCCCCGGCGCG‑GGGCAACCGGGCCCCCACGGCGAATCTTCCCACt < 1:27754580/64‑1 (MQ=255) gCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCCCTTGCg > 1:12644534/1‑68 (MQ=255) gCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCg > 1:3537857/1‑68 (MQ=255) ccTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCgg > 1:34969031/1‑68 (MQ=255) ccTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCgg > 1:7071407/1‑68 (MQ=255) ccTTTACC‑GGCGTCTCATCACCCGGCGCGGGTGAAACGGGG‑CGCCACGGCGAATCTTCCCACTTGCg < 1:16657090/67‑1 (MQ=255) ttttgCC‑GGCGTCTCACCCCCCGGCGCGGGGTAACCGGGG‑CGCCACGGCGAATCTTCCCACTTGCgg < 1:6152331/66‑1 (MQ=255) cTTTTCC‑GGCGTCTCATCACCCGGTGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGt < 1:23314511/68‑1 (MQ=255) cTTTGCC‑GGCGGCTCATCACCCGGCGCGCGGCAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGt < 1:27258286/68‑1 (MQ=39) tttcCC‑GGCGCCTCAACCCCGGGCGCGCGGGAAACCGGG‑CGCCACGGCGAATCTTCCCACTTGCGGt < 1:10705486/67‑1 (MQ=255) cc‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACgg > 1:15260319/1‑68 (MQ=255) cc‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACgg > 1:7851013/1‑68 (MQ=255) cc‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACgg > 1:3465860/1‑68 (MQ=255) cc‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACgg > 1:24593517/1‑68 (MQ=255) c‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACggg > 1:16311353/1‑68 (MQ=255) c‑GGCGTCAAATCCCCCGGCGCGGGGGAACCGGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACggg < 1:15378135/68‑1 (MQ=255) gggcggcTCATCCCCCGGCGCGGGGGAACCCGGG‑CCCCACGGCGAATCTTCCCACTTGCGGTCACggg < 1:4043934/67‑1 (MQ=255) ggcggcTCAACCCCCGGGGCGCGGGAAACCTTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACgggg < 1:8878428/68‑1 (MQ=255) ggCGTCTCATCACCCGGCGCGGGGTAACCCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACgggg < 1:26805307/68‑1 (MQ=255) ggCGTCTCATCACCCGGCGCGCGGTAAACGGGG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACgggg < 1:38948091/68‑1 (MQ=255) ggCGTCTCATCACCCGGCGCGCGGGAAACCGGG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACgggg < 1:16990521/68‑1 (MQ=255) cGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACggg > 1:327986/1‑65 (MQ=255) tctcATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTg > 1:25905458/1‑67 (MQ=255) ctcATCCCCGGGCGGGCGGTAAACCGGG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGa < 1:39197686/67‑1 (MQ=255) ctcATCCCCGGGCGCGCGGTAAACCGGG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGa < 1:34508510/67‑1 (MQ=255) cacaCCCGGCGCGCGGCAACCCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGActct < 1:16038261/66‑1 (MQ=255) atccCCGGGCGCGCGTTAAACGGGG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGActct < 1:36702232/68‑1 (MQ=255) atcaCCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGAc > 1:30757518/1‑65 (MQ=255) atcaCCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGAc > 1:22333862/1‑65 (MQ=255) atcaCCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGAc > 1:23840635/1‑65 (MQ=255) tcaCCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGAc > 1:39272685/1‑64 (MQ=255) tcaCCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGAc > 1:20327394/1‑64 (MQ=255) cccccGGCGGGGGGTAAACCGGG‑GCCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGt < 1:13022751/66‑1 (MQ=255) caCCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGt > 1:33860044/1‑68 (MQ=255) aCCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGtt > 1:23054260/1‑68 (MQ=255) cccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGttt > 1:3539293/1‑68 (MQ=255) cccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGttt > 1:37296620/1‑68 (MQ=255) cccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGttt > 1:31255351/1‑68 (MQ=255) cccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGttt > 1:8491175/1‑68 (MQ=255) ccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTg > 1:18446907/1‑68 (MQ=255) ccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTg > 1:11063050/1‑68 (MQ=255) ccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTg > 1:17339317/1‑68 (MQ=255) ccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTg > 1:1692398/1‑68 (MQ=255) ccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTg > 1:5182831/1‑68 (MQ=255) ccGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTg > 1:12232597/1‑68 (MQ=255) gcgcgGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATc > 1:29553796/1‑68 (MQ=255) cgcgGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATc > 1:18790613/1‑67 (MQ=255) gggAACCCGGG‑GGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCgcgg < 1:8276423/68‑1 (MQ=255) gggAACCCGCG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATcgcg < 1:20957621/67‑1 (MQ=255) aCCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGcgggcggg > 1:34346672/1‑68 (MQ=255) aCCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGcgggcggg > 1:26468597/1‑68 (MQ=255) | AAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCC‑GGCGTCTCATCACCCGGCGCGCGGGAAACCGTG‑CGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGG > CP009273/2711607‑2711740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |