| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,328 | A→C | 5.8% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,328 | 0 | A | C | 5.8% | 1502.7 / 5.7 | 652 | intergenic (+367/+247) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (368/182); new base C (49/3); total (459/193) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.16e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 654 total aligned reads displayed.
TCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGT > CP009273/3263262‑3263394 | tctttTGGGTATAGTGTCGTGGTCATAGAATCATCTAACTGCCCCACCCAAAATAAAAACCCGCCGaa > 1:33364219/1‑68 (MQ=2) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAAACCGCCGCAGCGGGTTTTTACg > 1:15358458/1‑68 (MQ=255) tgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGt > 1:34595068/1‑68 (MQ=35) gtCGTGGCCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGCCTTTTTACGTa > 1:9582531/1‑68 (MQ=11) gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa > 1:9810872/1‑68 (MQ=35) gtCGTGGACAGTCATTCATATTTCAGCCCCTCCAAAAGTAAAAACCCGCCGAAGAGGGTTTTTACGTa > 1:34949145/1‑68 (MQ=11) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:32341663/68‑1 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:25987426/68‑1 (MQ=35) gTGGACAGTCATTAATATTTATGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAAGTaaa > 1:11265575/1‑67 (MQ=11) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTTAAAcc > 1:2399229/1‑67 (MQ=255) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa > 1:30490443/1‑68 (MQ=40) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa > 1:34396843/1‑68 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:5047916/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:31122865/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:38804335/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:26715/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:28757247/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:15984212/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCAACCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAATACacg > 1:21093634/1‑66 (MQ=11) aCAGTCATTCATCTTTCTGAAACTCCAAAATAAAAAACCCGCCGAAGAGGGTTTTTAGGTAAAACCgg > 1:33034070/1‑68 (MQ=11) aCAGTCATTCATCTTTCGGCCCCTCCAAAAGAAAAAACCCGCAGAAGACGGTTTTTACGTAAAACAgg > 1:33768861/1‑68 (MQ=11) aCAGACATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:13014790/1‑68 (MQ=255) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGt < 1:17067357/64‑1 (MQ=40) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaaa < 1:38232842/68‑1 (MQ=255) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa < 1:19596298/67‑1 (MQ=40) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa < 1:1194275/67‑1 (MQ=40) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa < 1:2216535/66‑1 (MQ=255) attcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAc < 1:26435125/68‑1 (MQ=255) catCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa < 1:37974214/68‑1 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAcgtg > 1:3425686/1‑64 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:5165978/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:10117478/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:408139/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:19389930/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAcatg > 1:18973750/1‑64 (MQ=255) atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:18080295/1‑67 (MQ=255) atCTTTCTGCCCCTCAAAAAGAAAAAACACTCCGAACCGGGGTTATAAGTAAAAAAGGTGAATCTgc > 1:7277602/1‑66 (MQ=2) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc < 1:9105940/68‑1 (MQ=255) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc > 1:23564618/1‑68 (MQ=40) tCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc > 1:17599944/1‑68 (MQ=25) cTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCg > 1:31906187/1‑68 (MQ=255) ttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGAt > 1:6535725/1‑68 (MQ=40) gCCCCTCCAATATGAAAACCCGGCCGTTCGCGGTTTTTAAGTAAAACAGGTTAAACTGACCGATAAGc < 1:5629297/68‑1 (MQ=2) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAGTTACCCAtctc > 1:7956587/1‑64 (MQ=14) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:35289616/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:1427514/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:28194008/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAATTACCGATaac > 1:34008165/1‑66 (MQ=14) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCgg > 1:20092202/1‑67 (MQ=255) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:8781193/68‑1 (MQ=255) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:14827325/68‑1 (MQ=255) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:8356508/68‑1 (MQ=255) cAAAAGAACAAACCCGCCGTACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttc < 1:31770465/68‑1 (MQ=11) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttct < 1:16494758/68‑1 (MQ=255) aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:29078246/68‑1 (MQ=40) aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:4795738/68‑1 (MQ=40) aGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCGTTCtttt > 1:23827886/1‑68 (MQ=255) ctcAAACCCGCCGCACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:4343763‑M1/4‑68 (MQ=255) cagAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:1163272‑M1/4‑68 (MQ=255) TAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:20595425‑M1/1‑68 (MQ=255) acAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg > 1:20036561‑M1/3‑68 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTggg > 1:29307391‑M1/1‑68 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:22829736‑M1/1‑66 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTGttgtg < 1:18505547‑M1/68‑3 (MQ=255) tAAACCCGCCGACTCGGTTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTCTGGGt > 1:28370515‑M1/2‑68 (MQ=255) cAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:32699316‑M1/2‑68 (MQ=255) cAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:11156027‑M1/2‑68 (MQ=255) AAAACCCGCCGTAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:39124406‑M1/1‑68 (MQ=255) AAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:37761515‑M1/1‑68 (MQ=255) AAAACCCGCCGAAGCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:24861635‑M1/1‑68 (MQ=255) AAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:21516216‑M1/1‑68 (MQ=255) AAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:36238851‑M1/1‑68 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGtata > 1:26907853‑M1/1‑68 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg < 1:589825‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg < 1:10245579‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTGGGGTATAg < 1:3153784‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTGTTgggtaaag < 1:22419415‑M1/68‑4 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTGTGgggtagag < 1:1238605‑M1/68‑4 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCGTTCTGTTGGGTATAg < 1:10828273‑M1/68‑1 (MQ=255) CCGCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt > 1:13549065‑M1/1‑68 (MQ=255) CCGCCGCATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt > 1:25666447‑M1/1‑68 (MQ=255) CCGCCGAATCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt > 1:3702563‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt > 1:13897346‑M1/1‑68 (MQ=255) CCGCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt > 1:2085042‑M1/1‑68 (MQ=255) GCCGTAGCGGGTTTTTACGTACAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTatagcgt > 1:30000917‑M1/1‑65 (MQ=255) GCCGTAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:35883461‑M1/1‑68 (MQ=255) GCCGTAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:24439053‑M1/1‑68 (MQ=255) GCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:7639380‑M1/1‑68 (MQ=255) GCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:10563819‑M1/1‑68 (MQ=255) GCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:6233537‑M1/1‑68 (MQ=255) GCCGAAGCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:22023307‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:26259287‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:7013916‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTatagcgt > 1:36620099‑M1/1‑65 (MQ=255) GCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:30183633‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:33227821‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:37409333‑M1/1‑68 (MQ=255) GCCGAACCGGGTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt > 1:15110410‑M1/1‑68 (MQ=255) gAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGt < 1:12676979/68‑1 (MQ=40) gAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGt > 1:27600828/1‑68 (MQ=40) | TCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGT > CP009273/3263262‑3263394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |