| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,421 | C→A | 8.5% | intergenic (+460/+154) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,421 | 0 | C | A | 8.5% | 1565.5 / 12.8 | 572 | intergenic (+460/+154) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base C (312/192); new base A (45/20); total (359/213) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 573 total aligned reads displayed.
CCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTT > CP009273/3263361‑3263487 | ccGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGt > 1:10273778‑M2/1‑67 (MQ=255)ccGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGt > 1:5273950‑M2/1‑67 (MQ=255)ccGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGt > 1:14450330‑M2/1‑67 (MQ=255) aaGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCaaaa > 1:26215290/1‑67 (MQ=35) aaGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCAACAAAAGCaaaa > 1:4183079/1‑67 (MQ=255) aaGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCACCCCCAACAAAAGCaaaa > 1:37737343/1‑67 (MQ=11) cGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTTATCTTTCTGCCCCTCCAAAAGtaaaaaccc > 1:35316664‑M2/1‑58 (MQ=255) gCTTTCTTTTGGGTATAGTGTCGTGGACAGTAATTAATAATTATGCCCCAACAAAAGCAAAAACacg > 1:25516029/1‑67 (MQ=11) ttctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGa < 1:21419554/68‑1 (MQ=35) tctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaa > 1:2838311‑M2/1‑53 (MQ=255) tttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCg > 1:35702245/1‑68 (MQ=35) tttGGGTATAGTGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCg > 1:29575460/1‑68 (MQ=25) tttGGGTATAGTGTCGTGGACAGTCATTAATCTTTCAGCCCCTACAAAAACAAAAACCCGCCGCAGcc > 1:22123299/1‑67 (MQ=11) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcggg > 1:26982467‑M2/1‑48 (MQ=255) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcggg > 1:16491671‑M2/1‑48 (MQ=255) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:33716662/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:23242665/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggt > 1:39178182‑M2/1‑47 (MQ=255) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:35040421/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:915560/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:24524652/68‑1 (MQ=35) gTATAGTGTCGTGGCCAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCgggggt > 1:31820929/1‑65 (MQ=11) gTATAGTGTCGTGGACAGTCATTCATCTTTGTGCCCCTCCAAAAGaaaaaacccgccgaagcgggttt < 1:13263113‑M2/68‑24 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTGTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:2298153/1‑68 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTGTGCCCCTCCAAAACaaaaaacccgccgaagccgggtt < 1:17558000‑M2/68‑24 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTGTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGgtt > 1:373131/1‑68 (MQ=11) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggttt < 1:8325566‑M2/68‑24 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGaaaaaacccgccgaagcgggttt < 1:9723702‑M2/68‑24 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGttt > 1:14878677/1‑68 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGttt > 1:5954011/1‑68 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:13888312/1‑68 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt < 1:22480735/67‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAACCGCCGAAGCGGGttt > 1:20297248/1‑68 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGaaaaaacccgccgaagcgggttt < 1:11358490‑M2/68‑24 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:6547446/1‑68 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGgtt > 1:18170348/1‑68 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCAACAAAAGCAAAAACCCGCCGAAGCGGGgtt > 1:30616378/1‑68 (MQ=11) gTATAGTGTCGTGGACAGTCATTAATCTTTCTGCCCCACCAAAAGtaaaaacccgccgaagcggggtt < 1:5720074‑M2/68‑24 (MQ=255) gTATAGTGTCGTGGACAGTAAAACATCTTTCAGCCCCTCCAAAAGCAAAAACCCCCCGAAGCGGGgtt > 1:21302799/1‑68 (MQ=11) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggttttt < 1:119587‑M2/68‑26 (MQ=255) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggttttt < 1:13567583‑M2/68‑26 (MQ=255) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGgtttt > 1:21769993/1‑68 (MQ=25) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCCGGttttt > 1:3797331/1‑68 (MQ=25) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGaaaaaacaccccgaagcggggtttt < 1:18569211‑M2/68‑26 (MQ=255) taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa < 1:23441660/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTGGGCCCCTACAAAAGCAAAAACCCGCCGCAGCGCGGTTTTAc > 1:16239546/1‑68 (MQ=11) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggtttttac > 1:36720428‑M2/1‑41 (MQ=255) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggtttttac > 1:36463667‑M2/1‑41 (MQ=255) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggtttttac > 1:34562558‑M2/1‑41 (MQ=255) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:1556461/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:1931841/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCAACAAAAGCAAAAACCCGCCGCAGCGGGTTTTTAc > 1:32971780/1‑68 (MQ=11) aGTGTCGGGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggtttttac > 1:7526468‑M2/1‑41 (MQ=255) aGTGGCGTGGACGGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggtttttac > 1:4057104‑M2/1‑41 (MQ=255) aGTGGCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggtttttac > 1:708286‑M2/1‑41 (MQ=255) gtgtCGTGGACAGTCATTCATCTTTGTGCCCCTACAAAAGCAAAAACCAGCCGCAGACGGTTTTTaag > 1:25930012/1‑66 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTGTGCCCATGCAAAAGCAAAAACCCGCCGACGCGGGGGTTTACg > 1:26587145/1‑68 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggtttttaag < 1:28925201‑M2/68‑29 (MQ=255) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:309119/1‑68 (MQ=33) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:39501282/1‑68 (MQ=33) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:29123324/1‑68 (MQ=33) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:36112200/1‑68 (MQ=33) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGAAGCGGGTTTTTaag > 1:11152151/1‑66 (MQ=255) gtgtCGTGGACAGTCATTCATCTTTCGGCCCCTCCAAAAGCAAAAACCCGCCGAATCGGGTTTTTACg > 1:10715728/1‑68 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTATGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:12457114/1‑68 (MQ=18) tgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCCCGTTTTTACGt > 1:4508669/1‑68 (MQ=255) gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGtaaaaacccgccgaagcgggtttttact > 1:27933409‑M2/1‑38 (MQ=255) gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGaaaaaacccgccgaagcgggtttttactgt < 1:17344144‑M2/68‑31 (MQ=255) gtCGTGGACAGTAATTCATCTTTCTGCCCCTCCAAAACaaaaaacccgccgaagcggggttttaccta < 1:38699808‑M2/68‑31 (MQ=255) tGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGCGTTTTTACGTAAAc > 1:944777/1‑67 (MQ=255) ggACAGTCATTCATCTTTCTGCCCCTCCAAACGCAAAAACCCGCCGAAGCGGGGTTTTACGTAAGCCa > 1:19165967/1‑68 (MQ=11) ggACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:19767416/1‑68 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAACCCAgg > 1:24836748/1‑68 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAACCCAgg > 1:18821239/1‑68 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:20787917/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:32451245/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:23857879/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:27494559/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:12893198/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:12052197/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACACGCCGAAGCGTGTTTAAACGTAAACCa > 1:34239255/1‑66 (MQ=11) aCAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:38504699/1‑68 (MQ=25) aCAGTCATTCATCTTTCTGCCCATCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:25222809/1‑68 (MQ=25) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGa > 1:8769626/1‑68 (MQ=35) tcattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa > 1:31361884/1‑68 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:15802044/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:15022523/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGt < 1:37018617/64‑1 (MQ=25) ttcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACt < 1:4860448/68‑1 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg > 1:30276102/1‑68 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:14116595/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:33540028/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:33184556/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:32179962/1‑67 (MQ=35) atCTTTCTGCCCCCCCAAAACtaaaaacccgccgaagcgggtttttacttttggaggggcagaaagat > 1:16777915‑M2/1‑21 (MQ=255) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCg > 1:17086636/1‑68 (MQ=35) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCg > 1:6799219/1‑68 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:1780164/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:10019949/1‑67 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCg > 1:30030339/1‑68 (MQ=35) | CCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTT > CP009273/3263361‑3263487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |